View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16565_low_11 (Length: 335)
Name: NF16565_low_11
Description: NF16565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16565_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 5 - 314
Target Start/End: Complemental strand, 25715363 - 25715050
Alignment:
| Q |
5 |
ttctgtcatatctctatcaatatttcacgaaattttcttcaccgtgaatcccagattactttcattttctcatctccacttgacataatttcaactcata |
104 |
Q |
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| T |
25715363 |
ttctgtcatatctctatcaatatttcacgaaattttcttcaccgtgaatcccacattactttcattttctcatctccacttgacataatttcaactcata |
25715264 |
T |
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| Q |
105 |
atttggattgcaaccgcaattagcatcctttattatatcaagtatatattgatggctctagacatctcaatcattggtttaatcaatctatttccacta- |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25715263 |
atttggattgcaaccgcaattagcatcctttattatatcaagtatatattgatggctctagacatctcaatcattggtttaatcaatctatttccactat |
25715164 |
T |
|
| Q |
204 |
---tgtagttttgtaaagaaccataacggaaccagctaacacagtgacacgtattctaacacttgtcatactagtaagaatttcatgaatgaaattaatc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
25715163 |
gtatgtagttttgtaaagaaccataacggaaccagctaatacagtgacacgtattctaacacctgtcatactagtaagaatttcatgaatgaaattaatc |
25715064 |
T |
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| Q |
301 |
cataatcctatcat |
314 |
Q |
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|||||||||||||| |
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| T |
25715063 |
cataatcctatcat |
25715050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 192
Target Start/End: Complemental strand, 40389846 - 40389780
Alignment:
| Q |
124 |
ttagcatcctttattatatcaagtatatattgatggctctagacatctcaatcattggtttaatcaatc |
192 |
Q |
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|||||| || |||||||||||||||||| ||||||||||| |||||||| ||||| |||||||||| |
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| T |
40389846 |
ttagcagcccttattatatcaagtatat--tgatggctctaatgatctcaattattggcttaatcaatc |
40389780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 238
Target Start/End: Complemental strand, 43529231 - 43529134
Alignment:
| Q |
137 |
ttatatcaagtatatattgatggctctagacatctcaatcattggtttaatcaatctatttccactatgtagttttgtaaagaaccataacggaaccagc |
236 |
Q |
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||||||||||||||| ||||||||||| || ||||| ||||||||||||| || || | | ||||||||||| || |||||||||||||||||||| |
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| T |
43529231 |
ttatatcaagtatat--tgatggctctactgatatcaattattggtttaatcattc-atctg-attatgtagttttatacagaaccataacggaaccagc |
43529136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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