View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16565_low_13 (Length: 300)
Name: NF16565_low_13
Description: NF16565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16565_low_13 |
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| [»] scaffold0013 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 17 - 292
Target Start/End: Complemental strand, 40948201 - 40947926
Alignment:
| Q |
17 |
acttgaaagtgttgagtcttcgatgttcagggttgtcgaaagaagctctcattttaatattagatgagctaaaagacttagaagtgctcaacatttcaca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40948201 |
acttgaaagtgttgagtcttcgatgttcagggttgtcgaaagaagctctcattttaatattagatgagctaaaagacttagaagtgctcaacatttcaca |
40948102 |
T |
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| Q |
117 |
ttcttgtcatgtggtacctcttccatatcctcatgaaggatatatgttttctagtggtattgatcctataatcattgagaagggttccaggctgcgtgac |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40948101 |
ttcttgtcatgtggtacctcttccatatcctcatgaaggatatatgttttctagtggtattgatcctataatcattgagaagggttccaggctgcttgac |
40948002 |
T |
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| Q |
217 |
ttctacacatgcatggaagaatcatgcatcatgtgtcagaggccaaaagcagatgatgggcttcctagatggttca |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
40948001 |
ttctacacatgcatggaagaatcatgcatcatgtgtcagaggacaaaagcagatgatggacttcctagatggttca |
40947926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 22 - 130
Target Start/End: Original strand, 45656319 - 45656427
Alignment:
| Q |
22 |
aaagtgttgagtcttcgatgttcagggttgtcgaaaga-agctctcattttaatattagatgagctaaaagacttagaagtgctcaacatttcacattct |
120 |
Q |
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| T |
45656319 |
aaagtattgagtctgcgatgttcaggattgtc-aaagagagctctcattttaattctaaataagctaaaacatttggaagtgctcaacatttcacattct |
45656417 |
T |
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| Q |
121 |
tgtcatgtgg |
130 |
Q |
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| T |
45656418 |
tgtcatgtgg |
45656427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 292
Target Start/End: Original strand, 45656476 - 45656598
Alignment:
| Q |
170 |
gtggtattgatcctataatcattgagaagggttccaggctgcgtgacttctacacatgcatggaagaatcatgcatcatgtgtcagaggccaaaagcaga |
269 |
Q |
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||| |||||| ||||| ||||||||||| | ||| ||| | ||||| || |||||||||| | ||||| |||||||||||| ||||| ||| || || |
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| T |
45656476 |
gtgatattgaccctattatcattgagaaagcttctaggttacgtgagtttcacacatgcatcaaggaatcgtgcatcatgtgtaagaggacaagagatga |
45656575 |
T |
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| Q |
270 |
tgatgggcttcctagatggttca |
292 |
Q |
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| T |
45656576 |
tgatgggcttgttaggtggttca |
45656598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 123
Target Start/End: Complemental strand, 38717 - 38622
Alignment:
| Q |
28 |
ttgagtcttcgatgttcagggttgtcgaaagaagctctcattttaatattagatgagctaaaagacttagaagtgctcaacatttcacattcttgt |
123 |
Q |
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|||||| ||||||||||||||||| ||||||||||||||| ||||| |||||| || || | ||||||||||| || ||||||||||||||| |
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| T |
38717 |
ttgagtattcgatgttcagggttggtgaaagaagctctcatcttaattttagatagattacaatatttagaagtgctaaatatttcacattcttgt |
38622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 254
Target Start/End: Complemental strand, 38521 - 38488
Alignment:
| Q |
221 |
acacatgcatggaagaatcatgcatcatgtgtca |
254 |
Q |
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| T |
38521 |
acacatgcatgaaagaatcatgcatcatgtgtca |
38488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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