View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16565_low_14 (Length: 299)

Name: NF16565_low_14
Description: NF16565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16565_low_14
NF16565_low_14
[»] chr8 (1 HSPs)
chr8 (1-289)||(27770638-27770930)


Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 27770638 - 27770930
Alignment:
Q  1 ttcaaaaatgaattcttacagttaagatatgtatctgcattcacgcac----tgaatgcattggtgaatggtgggagttaaatttgataggacactttat 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    |||| |||||||||||||||| ||||||||||||||||||||||||      
T  27770638 ttcaaaaatgaattcttacagttaagatatgtatctgcattcacgcacgcactgaa-gcattggtgaatggtgagagttaaatttgataggacacttttc 27770736  T
Q  97 aaaaatgcaaatttaaactttcttgt-aaaatctaaattaccaaacttaatatctaaaccgcccaactatcaactatatcttgaataaatgaattcaaga 195  Q
    |||||||||||||| || |||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27770737 aaaaatgcaaattttaattttctttttaaaatctaaattaccaaacttattatctaaaccgcccaactatcaactatatcttgaataaatgaattcaaga 27770836  T
Q  196 tatccttcctgcaaagaatcttgatcccattaattcagggatccaaattgcataaataacatatacatatttaaaagaaaaatacagataagaa 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27770837 tatccttcctgcaaagaatcttgatcccattaattcagggatccaaattgcataaataacatatacatatttaaaagaaaaatacagataagaa 27770930  T

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