View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16565_low_19 (Length: 262)
Name: NF16565_low_19
Description: NF16565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16565_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 36453486 - 36453244
Alignment:
| Q |
1 |
aacccttacacac-acatatttttt-actctttaaccagtacagaaaggtagggaaccatatatgtgcctatgccatgatacacagttccatacactagg |
98 |
Q |
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| T |
36453486 |
aacccttacacaccacatatttttttactctttaaccagtacagaaaggtagggaaccatataggtgcctatgccatgatacatagttccatacactagt |
36453387 |
T |
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| Q |
99 |
aaggcaaccatatatactaattcatatataactaaaacttgatgacctgaaacgtgaaaagtgttattattgatggaaaataactccatataattcatac |
198 |
Q |
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| T |
36453386 |
t------ccataa--------tcatatataactaaaacttgatgacctgaaacgtgaaaagtgttattattgatggaaaataactccatataattcatac |
36453301 |
T |
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| Q |
199 |
tatctagcaaggtagctaattaattttcagaccctggtgcctttgaacttcatctca |
255 |
Q |
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| T |
36453300 |
tatctagcaaggtagctaattaattttcagaccctggtgcctttgaacttcttctca |
36453244 |
T |
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