View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16565_low_2 (Length: 755)
Name: NF16565_low_2
Description: NF16565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16565_low_2 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 522 - 755
Target Start/End: Complemental strand, 52273304 - 52273071
Alignment:
| Q |
522 |
ccaataactcacatagtttaatgtgttttgtttagaaacaagagatgctgcatttaaacctgttcctctggttcagaagcctatttcgtctatactggat |
621 |
Q |
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| T |
52273304 |
ccaataactcacatagtttaatgtgttttgtttagaaacaagagatgctgcatttaaacctgttcctctggttcagaagcctatttcgtctatactggat |
52273205 |
T |
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| Q |
622 |
aaaattcgaaagaggaaattagaatttttaaagaagtaagtgggtttacatcaatattttgtttcagcatgcacttaattgggatatttttactttagat |
721 |
Q |
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| T |
52273204 |
aaaattcgaaagaggaaattagaatttttaaagaagtaagtgggtttacatcaatattttgtttcagcatgcacttaattgggatatttttactttagat |
52273105 |
T |
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| Q |
722 |
aaacactaatggatacttgggttgggtttcagat |
755 |
Q |
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| T |
52273104 |
aaacactaatggatacttgggttgggtttcagat |
52273071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 256 - 472
Target Start/End: Complemental strand, 52273563 - 52273347
Alignment:
| Q |
256 |
ggcagtgacgacgataacggcagtgagaagaagcttaaagaatctatctccaataaaagaaaagccgagaaggtttgtatgcgttttccagtgaattctt |
355 |
Q |
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| T |
52273563 |
ggcagtgacgacgataacggcagtgagaagaagcttaaagaatctatctccaataaaagaaaagccgagaaggtttgtatgcgttttccagtgaattatt |
52273464 |
T |
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| Q |
356 |
tttatacaatttgttattgattttattaatttgtagattcaccgatttaacaggaaagaagggaaaatctcaaacagcttcgagctgagtctcagagact |
455 |
Q |
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| T |
52273463 |
tttatacaatttgttattgattttattaatttgtagattcaccgatttaacaggaaagaagggaaaatctcaaacagcttcgagctgagtctcagagact |
52273364 |
T |
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| Q |
456 |
tcttcgcggtatggata |
472 |
Q |
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| T |
52273363 |
tcttcgcggtatggata |
52273347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 7 - 182
Target Start/End: Complemental strand, 52273812 - 52273637
Alignment:
| Q |
7 |
gaaagcttgggtggtgaaaatgttactgacacagttgaggaaaacgatttgggtgcgaagagggttttggagtttgaatctatggacgatgaacttgacg |
106 |
Q |
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| T |
52273812 |
gaaagcttgggtggtgaaaatgttactgacacagttgaggaaaacgatttgggtgcgaagagggttttggagtttgaatctatggacgatgaacttgacg |
52273713 |
T |
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| Q |
107 |
ccagggttccagagaagacaatagaagaatccggggataagaatacagtcgaattagaaattaagcaacctagtgt |
182 |
Q |
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| T |
52273712 |
ccagggttccagagaagacaatagaagaatccggggataagaatacagtcgaattagaaattaagcaacctagtgt |
52273637 |
T |
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