View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16565_low_21 (Length: 232)

Name: NF16565_low_21
Description: NF16565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16565_low_21
NF16565_low_21
[»] scaffold0101 (1 HSPs)
scaffold0101 (95-217)||(12881-13003)
[»] chr8 (5 HSPs)
chr8 (166-217)||(17322206-17322257)
chr8 (166-217)||(17327984-17328035)
chr8 (166-217)||(17305374-17305425)
chr8 (16-87)||(17342146-17342217)
chr8 (24-87)||(17318599-17318662)
[»] chr4 (1 HSPs)
chr4 (26-87)||(25658835-25658896)
[»] chr2 (1 HSPs)
chr2 (24-87)||(25850420-25850483)


Alignment Details
Target: scaffold0101 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 95 - 217
Target Start/End: Original strand, 12881 - 13003
Alignment:
Q  95 acaccaaatattcatagtctgtctccgctgtaacacccaaacacaaaattcnnnnnnnctgagggaagttgcatttgtggtacaccaaacccatgtaaca 194  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||    
T  12881 acactaaatattcatagtctgtctccgctgtaacacccaaacacaaaattcaaaagaactgagggaagttgcatttgtggtacaccaaacccatgtaaca 12980  T
Q  195 ctaaccctgttaacaccagatga 217  Q
    |||||||||||||||||||||||    
T  12981 ctaaccctgttaacaccagatga 13003  T

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Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 166 - 217
Target Start/End: Original strand, 17322206 - 17322257
Alignment:
Q  166 catttgtggtacaccaaacccatgtaacactaaccctgttaacaccagatga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17322206 catttgtggtacaccaaacccatgtaacactaaccctgttaacaccagatga 17322257  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 166 - 217
Target Start/End: Original strand, 17327984 - 17328035
Alignment:
Q  166 catttgtggtacaccaaacccatgtaacactaaccctgttaacaccagatga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17327984 catttgtggtacaccaaacccatgtaacactaaccctgttaacaccagatga 17328035  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 166 - 217
Target Start/End: Original strand, 17305374 - 17305425
Alignment:
Q  166 catttgtggtacaccaaacccatgtaacactaaccctgttaacaccagatga 217  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  17305374 catttgtggtacaccaaacccatgtaacactaaccccgttaacaccagatga 17305425  T

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Target: chr8; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 17342146 - 17342217
Alignment:
Q  16 tagggcaaacaaagacgaagacgtgtgaaaaacagtttattatcttccaattattcatgacgatagcgacgt 87  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| |||  |||||| |||||||||||||||    
T  17342146 tagggcagacaaagacgaagacatgtgaaaaacagtttattatcgtccggttattcgtgacgatagcgacgt 17342217  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 17318599 - 17318662
Alignment:
Q  24 acaaagacgaagacgtgtgaaaaacagtttattatcttccaattattcatgacgatagcgacgt 87  Q
    |||||||||||||| ||||||||||| ||||||||| |||  |||||  |||||||||||||||    
T  17318599 acaaagacgaagacatgtgaaaaacaatttattatcctccggttatttgtgacgatagcgacgt 17318662  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 25658896 - 25658835
Alignment:
Q  26 aaagacgaagacgtgtgaaaaacagtttattatcttccaattattcatgacgatagcgacgt 87  Q
    ||||| |||||||||||||||||||||||||||| ||   |||||||||| ||||| |||||    
T  25658896 aaagatgaagacgtgtgaaaaacagtttattatcatctggttattcatgatgatagtgacgt 25658835  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 25850483 - 25850420
Alignment:
Q  24 acaaagacgaagacgtgtgaaaaacagtttattatcttccaattattcatgacgatagcgacgt 87  Q
    |||||||||||||| |||||||||  |||||||||||||   |||||| |||||||| ||||||    
T  25850483 acaaagacgaagacatgtgaaaaatggtttattatcttcaggttattcgtgacgataacgacgt 25850420  T

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