View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16565_low_23 (Length: 205)
Name: NF16565_low_23
Description: NF16565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16565_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 3 - 189
Target Start/End: Complemental strand, 40721965 - 40721779
Alignment:
| Q |
3 |
tattcctctgattctgttcttcaagtcgtaccactgtatatgtttaatgttgcatctcttagtgttctttctctttattagtttattgtcttgttcctca |
102 |
Q |
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|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
40721965 |
tattcctctggttctgtccttcaagtcgtaccactgtatatgtttaatgttgcatctctgagtgttctttctctttattagtttattgtcttgttcctca |
40721866 |
T |
|
| Q |
103 |
tatagaaacctaatagttccttggtttgagtttgttgtttgaatccaatttagatggattagcttctagattttccacagagtaagt |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
40721865 |
tatagaaacctaatagttccttggtttgagtttgttgtttgagtccaatttagatggattagcttctagattttccacggagtaagt |
40721779 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 159; Significance: 7e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 3 - 189
Target Start/End: Complemental strand, 26794991 - 26794805
Alignment:
| Q |
3 |
tattcctctgattctgttcttcaagtcgtaccactgtatatgtttaatgttgcatctcttagtgttctttctctttattagtttattgtcttgttcctca |
102 |
Q |
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|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
26794991 |
tattcctctggttctgtccttcaagtcgtaccactgtatatgtttaatgttgcatctctgagtgttctttctctttattagtttattgtcttgttcctca |
26794892 |
T |
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| Q |
103 |
tatagaaacctaatagttccttggtttgagtttgttgtttgaatccaatttagatggattagcttctagattttccacagagtaagt |
189 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
26794891 |
tatagaaacctaatagttccttggtttcagtttgttgtttgagtccaatttagatggattagcttctagattttccatggagtaagt |
26794805 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 148 - 179
Target Start/End: Complemental strand, 16003590 - 16003559
Alignment:
| Q |
148 |
caatttagatggattagcttctagattttcca |
179 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
16003590 |
caatttagatggattagcttctagattttcca |
16003559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 3 - 127
Target Start/End: Original strand, 27222875 - 27222999
Alignment:
| Q |
3 |
tattcctctgattctgttcttcaagtcgtaccactgtatatgtttaatgttgcatctcttagtgttctttctctttattagtttattgtcttgttcctca |
102 |
Q |
| |
|
|||||||||| ||||| |||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
27222875 |
tattcctctggttctgcccttcaagtcgtatcactgtatatgtttaatgttgcatcactgagtgttctttctctttattagtttattgtcttgttcctca |
27222974 |
T |
|
| Q |
103 |
tatagaaacctaatagttccttggt |
127 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
27222975 |
tatagaaacctaatagttccttggt |
27222999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 44 - 179
Target Start/End: Original strand, 8530684 - 8530818
Alignment:
| Q |
44 |
gtttaatgttgcatctcttagtgttctttctctttattagtttattgtcttgttcctcatatagaaacctaatagttccttggtttgagtttgttgtttg |
143 |
Q |
| |
|
||||||||||||| |||| ||| | ||||||||| ||||||| ||| ||||||||||||||| |||||||||| ||| || ||| | | ||||||||| |
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| T |
8530684 |
gtttaatgttgcaactctgagtctactttctcttaattagttaattaccttgttcctcatataaaaacctaataattcatt-ctttaaatatgttgtttg |
8530782 |
T |
|
| Q |
144 |
aatccaatttagatggattagcttctagattttcca |
179 |
Q |
| |
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| ||||||||||||||||| |||||||||||||||| |
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| T |
8530783 |
agtccaatttagatggattggcttctagattttcca |
8530818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 44 - 179
Target Start/End: Complemental strand, 5155564 - 5155430
Alignment:
| Q |
44 |
gtttaatgttgcatctcttagtgttctttctctttattagtttattgtcttgttcctcatatagaaacctaatagttccttggtttgagtttgttgtttg |
143 |
Q |
| |
|
|||||||||| || |||| ||| | ||||||||| ||||||| ||| ||||||||||||||| |||||||||| |||||| ||| | ||||||||||| |
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| T |
5155564 |
gtttaatgttccaactctgagtctgctttctcttaattagttaatttccttgttcctcatataaaaacctaataattcctt-ctttcaatttgttgtttg |
5155466 |
T |
|
| Q |
144 |
aatccaatttagatggattagcttctagattttcca |
179 |
Q |
| |
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| |||||||||||| |||| |||||||||||||||| |
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| T |
5155465 |
actccaatttagatagattggcttctagattttcca |
5155430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 44 - 164
Target Start/End: Complemental strand, 3384768 - 3384649
Alignment:
| Q |
44 |
gtttaatgttgcatctcttagtgttctttctctttattagtttattgtcttgttcctcatatagaaacctaatagttccttggtttgagtttgttgtttg |
143 |
Q |
| |
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||||||||||||| |||| ||| | ||||||||| ||||||| |||| |||||||||||||| |||||||||| |||||| ||| | ||||||||||| |
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| T |
3384768 |
gtttaatgttgcaactctgagtctgctttctcttaattagttaattgctttgttcctcatataaaaacctaataattcctt-ctttcaatttgttgtttg |
3384670 |
T |
|
| Q |
144 |
aatccaatttagatggattag |
164 |
Q |
| |
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| ||||||||||||||||||| |
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| T |
3384669 |
agtccaatttagatggattag |
3384649 |
T |
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