View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16565_low_3 (Length: 633)

Name: NF16565_low_3
Description: NF16565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16565_low_3
NF16565_low_3
[»] chr2 (4 HSPs)
chr2 (24-597)||(37830793-37831366)
chr2 (262-301)||(13337302-13337341)
chr2 (241-289)||(1269490-1269538)
chr2 (231-287)||(14405195-14405251)
[»] chr7 (3 HSPs)
chr7 (315-403)||(28006672-28006760)
chr7 (130-163)||(17802972-17803005)
chr7 (231-287)||(6584906-6584962)
[»] chr1 (7 HSPs)
chr1 (335-410)||(8133528-8133603)
chr1 (140-301)||(15840926-15841091)
chr1 (315-410)||(2660746-2660841)
chr1 (211-297)||(41403016-41403102)
chr1 (471-545)||(8133655-8133730)
chr1 (231-301)||(46814481-46814551)
chr1 (132-177)||(27335501-27335546)
[»] scaffold0236 (1 HSPs)
scaffold0236 (264-408)||(10309-10452)
[»] chr3 (7 HSPs)
chr3 (315-407)||(24099163-24099255)
chr3 (150-207)||(24992026-24992084)
chr3 (146-199)||(30127170-30127224)
chr3 (124-197)||(51065963-51066037)
chr3 (233-301)||(19176501-19176569)
chr3 (262-301)||(19295879-19295918)
chr3 (233-301)||(43012374-43012442)
[»] chr6 (3 HSPs)
chr6 (228-300)||(34105407-34105479)
chr6 (134-179)||(34105321-34105366)
chr6 (211-297)||(20970423-20970509)
[»] chr4 (6 HSPs)
chr4 (245-301)||(2792288-2792344)
chr4 (224-284)||(31050693-31050753)
chr4 (125-179)||(2165395-2165449)
chr4 (212-301)||(2165486-2165574)
chr4 (262-299)||(32057141-32057178)
chr4 (134-198)||(46879831-46879896)
[»] scaffold0620 (1 HSPs)
scaffold0620 (229-300)||(3825-3896)
[»] scaffold0572 (1 HSPs)
scaffold0572 (211-297)||(6273-6359)
[»] scaffold0127 (1 HSPs)
scaffold0127 (211-297)||(31233-31319)
[»] scaffold0036 (2 HSPs)
scaffold0036 (313-400)||(64195-64282)
scaffold0036 (313-400)||(69337-69424)
[»] scaffold0200 (1 HSPs)
scaffold0200 (231-289)||(19380-19438)
[»] chr5 (1 HSPs)
chr5 (124-169)||(28765752-28765797)
[»] scaffold0119 (1 HSPs)
scaffold0119 (241-289)||(42164-42212)


Alignment Details
Target: chr2 (Bit Score: 489; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 24 - 597
Target Start/End: Original strand, 37830793 - 37831366
Alignment:
Q  24 cagttaagtttaaaaactgtctataactgcgtggtttttccttagcaaggaatctaagtcagacataaatacatccccatatctctagttagaaaacatc 123  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37830793 cagttaagtttgaaaactgcctataactgcgtggtttttccttagcaaggaatctaagtcagacataaatacatccccatatctctagttagaaaacatc 37830892  T
Q  124 ctggtaggccgatcacttttacttcgagatcggaagttagtgtctagtttcaagttatgggatggttaaggtgtcttatccgaacgtggagttgagggac 223  Q
     ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37830893 ttggtaggcctatcacttttacttcgagatcggaagttagtgtctagtttcaagttatgggatggttaaggtgtcttatccgaacgtggagttgagggac 37830992  T
Q  224 gccctagtgatttgtttctaaagtctggtaagccggtgacttttgattcgaaatcggaagtcagtttcttgactcaagnnnnnnngtcatattttggtgt 323  Q
    ||||||||||||||||||||||||| ||||||||| | ||||||||||||||||| ||||||||||||||||||||||       | |||||||||||||    
T  37830993 gccctagtgatttgtttctaaagtcaggtaagccgatcacttttgattcgaaatctgaagtcagtttcttgactcaagtttttttgccatattttggtgt 37831092  T
Q  324 cttctacgacgaaccgaggattgattggtggtggaatccgaatgagtgttgaaatttggctcagttgtggtgatgagaaggtgaggtaagggtttattgg 423  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  37831093 cttctacgacgaaccgaggattgattggtggtggaatctgaatgagtgttgaaatttggctcagttgtggttatgagaaggtgaggtaagggtttattgg 37831192  T
Q  424 ttttttagcattggatttggtgtgagtaccaggccataggtgtgtagattttgttcttgtggccattcgcgatgtagttatgaggttttgattcaacttt 523  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37831193 ttttttagcattggatttggtgtgagtagcaggcgataggtgtgtagattttgttcttgtggccattcgcgatgtagttatgaggttttgattcaacttt 37831292  T
Q  524 tggctatgtgggtttgtgggggtttagctttgttagaggtttgtttttattagggtttaagatgtaccgtgtat 597  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||    
T  37831293 tggctatgtgggtttgtgggggtttagcttggttagaggtttgtttttattggggtttaagatgtaccatgtat 37831366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 301
Target Start/End: Original strand, 13337302 - 13337341
Alignment:
Q  262 acttttgattcgaaatcggaagtcagtttcttgactcaag 301  Q
    ||||||||||||||||||||||||||||  ||||||||||    
T  13337302 acttttgattcgaaatcggaagtcagttctttgactcaag 13337341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 241 - 289
Target Start/End: Original strand, 1269490 - 1269538
Alignment:
Q  241 ctaaagtctggtaagccggtgacttttgattcgaaatcggaagtcagtt 289  Q
    ||||||||||||  |||| | ||||||||||||| ||||||||||||||    
T  1269490 ctaaagtctggtgggccgatcacttttgattcgagatcggaagtcagtt 1269538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 231 - 287
Target Start/End: Original strand, 14405195 - 14405251
Alignment:
Q  231 tgatttgtttctaaagtctggtaagccggtgacttttgattcgaaatcggaagtcag 287  Q
    ||||||| ||||||||||||||  |||| | ||||||||||||| ||||| ||||||    
T  14405195 tgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcag 14405251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 7e-26; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 315 - 403
Target Start/End: Original strand, 28006672 - 28006760
Alignment:
Q  315 ttttggtgtcttctacgacgaaccgaggattgattggtggtggaatccgaatgagtgttgaaatttggctcagttgtggtgatgagaag 403  Q
    |||||||||||||| || | |||| ||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||    
T  28006672 ttttggtgtcttctccgtcaaacctaggattgattggtggtggaatccgaatgagtgtgggaatttggctcaattgtggtgatgagaag 28006760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 163
Target Start/End: Complemental strand, 17803005 - 17802972
Alignment:
Q  130 ggccgatcacttttacttcgagatcggaagttag 163  Q
    |||||||||||||| |||||||||||||||||||    
T  17803005 ggccgatcacttttgcttcgagatcggaagttag 17802972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 231 - 287
Target Start/End: Original strand, 6584906 - 6584962
Alignment:
Q  231 tgatttgtttctaaagtctggtaagccggtgacttttgattcgaaatcggaagtcag 287  Q
    ||||||| ||||||||||||||  |||| | ||||||||||||| ||||| ||||||    
T  6584906 tgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcag 6584962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 7e-23; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 335 - 410
Target Start/End: Original strand, 8133528 - 8133603
Alignment:
Q  335 aaccgaggattgattggtggtggaatccgaatgagtgttgaaatttggctcagttgtggtgatgagaaggtgaggt 410  Q
    ||||||||||| |||||||||||||| |||||||||| |||||||||| | |||||||||||||||||||||||||    
T  8133528 aaccgaggattaattggtggtggaattcgaatgagtgctgaaatttggttgagttgtggtgatgagaaggtgaggt 8133603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 140 - 301
Target Start/End: Complemental strand, 15841091 - 15840926
Alignment:
Q  140 ttttacttcgagatcggaagttagtgtctagtttcaagttatgg-gatggttaaggtgtcttatccgaacgt---ggagttgagggacgccctagtgatt 235  Q
    |||| ||||||||||||||||||| ||||||||||||||| | | |||||||||||||| || |||||| ||   |||| ||||||   || ||| ||||    
T  15841091 ttttgcttcgagatcggaagttagcgtctagtttcaagtttttgtgatggttaaggtgttttctccgaatgtccgggagatgaggggttccttagggatt 15840992  T
Q  236 tgtttctaaagtctggtaagccggtgacttttgattcgaaatcggaagtcagtttcttgactcaag 301  Q
    |||||||| ||||||||  || | | ||||||||||||| ||||| |||||||||||||| |||||    
T  15840991 tgtttctagagtctggtgggctgatcacttttgattcgagatcgggagtcagtttcttgattcaag 15840926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 315 - 410
Target Start/End: Complemental strand, 2660841 - 2660746
Alignment:
Q  315 ttttggtgtcttctacgacgaaccgaggattgattggtggtggaatccgaatgagtgttgaaatttggctcagttgtggtgatgagaaggtgaggt 410  Q
    ||||||| ||||||  |||  ||||||||||||||| ||||| |||  ||| |||||| | |||||||||||| |  |||||||||||||||||||    
T  2660841 ttttggtatcttctctgacataccgaggattgattgatggtgaaatatgaacgagtgtgggaatttggctcagctcaggtgatgagaaggtgaggt 2660746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 297
Target Start/End: Complemental strand, 41403102 - 41403016
Alignment:
Q  211 ggagttgagggacgccctagtgatttgtttctaaagtctggtaagccggtgacttttgattcgaaatcggaagtcagtttcttgact 297  Q
    |||||||||||  | | |||||||||||||||| |||||||| ||||| | || ||||||||||   || |||||||||||||||||    
T  41403102 ggagttgaggggtgacttagtgatttgtttctagagtctggtgagccgatcacatttgattcgaggacgaaagtcagtttcttgact 41403016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 471 - 545
Target Start/End: Original strand, 8133655 - 8133730
Alignment:
Q  471 attttgttcttgtggccattcgcgatgtagttatgaggttttgattcaacttttgg-ctatgtgggtttgtggggg 545  Q
    |||||||| ||||||||||||  |||| |||| ||||||||||  |||||||||||  ||||| ||||||||||||    
T  8133655 attttgtttttgtggccattcatgatgaagttgtgaggttttggctcaacttttggtttatgttggtttgtggggg 8133730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 231 - 301
Target Start/End: Complemental strand, 46814551 - 46814481
Alignment:
Q  231 tgatttgtttctaaagtctggtaagccggtgacttttgattcgaaatcggaagtcagtttcttgactcaag 301  Q
    ||||||| ||||||||||||||  |||| | ||||||||||||| ||||| |||||| || ||| ||||||    
T  46814551 tgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagctttttggctcaag 46814481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 177
Target Start/End: Complemental strand, 27335546 - 27335501
Alignment:
Q  132 ccgatcacttttacttcgagatcggaagttagtgtctagtttcaag 177  Q
    ||||||||||||  ||||||||||||| |||||| |||||||||||    
T  27335546 ccgatcacttttggttcgagatcggaaattagtgcctagtttcaag 27335501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 264 - 408
Target Start/End: Complemental strand, 10452 - 10309
Alignment:
Q  264 ttttgattcgaaatcggaagtcagtttcttgactcaagnnnnnnngtcatattttggtgtcttctacgacgaaccgaggattgattggtggtggaatccg 363  Q
    ||||||||||| ||||  ||||||||||||||||||||       | | | ||||||||||||||   || ||||||||||||||||||||||||||||     
T  10452 ttttgattcgagatcgagagtcagtttcttgactcaagttgtttgg-cttgttttggtgtcttctctaacaaaccgaggattgattggtggtggaatcca 10354  T
Q  364 aatgagtgttgaaatttggctcagttgtggtgatgagaaggtgag 408  Q
    |||||||    |||||| ||||||||| || ||||||||||||||    
T  10353 aatgagttcataaatttagctcagttgaggagatgagaaggtgag 10309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 315 - 407
Target Start/End: Complemental strand, 24099255 - 24099163
Alignment:
Q  315 ttttggtgtcttctacgacgaaccgaggattgattggtggtggaatccgaatgagtgttgaaatttggctcagttgtggtgatgagaaggtga 407  Q
    |||| ||||||||| |||   ||||||  |||||||||||||| |||||||| ||||||| |||| |||| ||||||||||||||||||||||    
T  24099255 ttttagtgtcttctccgagagaccgagagttgattggtggtggtatccgaataagtgttggaattaggctaagttgtggtgatgagaaggtga 24099163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 24992084 - 24992026
Alignment:
Q  150 agatcggaagttagtgtctagtttcaagttat-gggatggttaaggtgtcttatccgaa 207  Q
    ||||| |||||||| |||||||| |||||||| ||||||||||||||||||| ||||||    
T  24992084 agatcagaagttagcgtctagttccaagttattgggatggttaaggtgtcttctccgaa 24992026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 30127170 - 30127224
Alignment:
Q  146 ttcgagatcggaagttagtgtctagtttcaag-ttatgggatggttaaggtgtct 199  Q
    ||||||||| |||||||||||||||||||||| || |||| ||||||||||||||    
T  30127170 ttcgagatcagaagttagtgtctagtttcaagtttttgggttggttaaggtgtct 30127224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 197
Target Start/End: Complemental strand, 51066037 - 51065963
Alignment:
Q  124 ctggtaggccgatcacttttacttcgagatcggaagttagtgtctagtttcaag-ttatgggatggttaaggtgt 197  Q
    ||||| |||| ||||||||| |||| ||||||||||| |||||||| ||||||| || || ||||||||||||||    
T  51066037 ctggttggccaatcacttttgcttcaagatcggaagtcagtgtctaatttcaagtttttgcgatggttaaggtgt 51065963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 19176501 - 19176569
Alignment:
Q  233 atttgtttctaaagtctggtaagccggtgacttttgattcgaaatcggaagtcagtttcttgactcaag 301  Q
    ||||| ||||||||||||||  |||| | ||||||||||||| ||||| ||||||||  ||||||||||    
T  19176501 atttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaag 19176569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 301
Target Start/End: Complemental strand, 19295918 - 19295879
Alignment:
Q  262 acttttgattcgaaatcggaagtcagtttcttgactcaag 301  Q
    ||||||||||||| ||||||||| ||||||||||||||||    
T  19295918 acttttgattcgatatcggaagttagtttcttgactcaag 19295879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 43012374 - 43012442
Alignment:
Q  233 atttgtttctaaagtctggtaagccggtgacttttgattcgaaatcggaagtcagtttcttgactcaag 301  Q
    ||||| ||||||||||||||   ||| | ||||||||||||| ||||| ||||||||  ||||||||||    
T  43012374 atttggttctaaagtctggtggcccgatcacttttgattcgagatcgggagtcagttctttgactcaag 43012442  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 228 - 300
Target Start/End: Original strand, 34105407 - 34105479
Alignment:
Q  228 tagtgatttgtttctaaagtctggtaagccggtgacttttgattcgaaatcggaagtcagtttcttgactcaa 300  Q
    |||||||||||||||| ||| ||||  |||| | ||||||||||||| ||||| |||||||||||||||||||    
T  34105407 tagtgatttgtttctagagtttggtgggccgatcacttttgattcgagatcgggagtcagtttcttgactcaa 34105479  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 134 - 179
Target Start/End: Original strand, 34105321 - 34105366
Alignment:
Q  134 gatcacttttacttcgagatcggaagttagtgtctagtttcaagtt 179  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||    
T  34105321 gatcatttttgcttcgagatcggaagttagtgtctagtttcaagtt 34105366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 297
Target Start/End: Complemental strand, 20970509 - 20970423
Alignment:
Q  211 ggagttgagggacgccctagtgatttgtttctaaagtctggtaagccggtgacttttgattcgaaatcggaagtcagtttcttgact 297  Q
    |||||||||||  | | |||||||||||||||| |||||||| ||||| | || ||||||||||   || |||||||||||||||||    
T  20970509 ggagttgaggggtgacttagtgatttgtttctagagtctggtgagccgatcacatttgattcgaggacgaaagtcagtttcttgact 20970423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 301
Target Start/End: Complemental strand, 2792344 - 2792288
Alignment:
Q  245 agtctggtaagccggtgacttttgattcgaaatcggaagtcagtttcttgactcaag 301  Q
    ||||| ||| |||| | ||||||||||||| ||||||||||||||||||||||||||    
T  2792344 agtctagtaggccgatcacttttgattcgagatcggaagtcagtttcttgactcaag 2792288  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 31050753 - 31050693
Alignment:
Q  224 gccctagtgatttgtttctaaagtctggtaagccggtgacttttgattcgaaatcggaagt 284  Q
    |||||| ||||||| ||||||||||||||  |||| | ||||||||||||| |||||||||    
T  31050753 gccctactgatttggttctaaagtctggtgggccgatcacttttgattcgagatcggaagt 31050693  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 125 - 179
Target Start/End: Original strand, 2165395 - 2165449
Alignment:
Q  125 tggtaggccgatcacttttacttcgagatcggaagttagtgtctagtttcaagtt 179  Q
    |||| |||||||||||||| |||| | |||| ||||||||||||| |||||||||    
T  2165395 tggtgggccgatcacttttgcttcaatatcgaaagttagtgtctattttcaagtt 2165449  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 301
Target Start/End: Original strand, 2165486 - 2165574
Alignment:
Q  212 gagttgagggacgccctagtgatttgtttctaaagtctggtaagccggtgacttttgattcgaaatcggaagtcagtttcttgactcaag 301  Q
    |||||||| || ||| | |||||||||||||| ||| ||||  |||| |  ||||||||| || ||||| ||||||||||||||||||||    
T  2165486 gagttgagtgatgccttggtgatttgtttctagagtttggtg-gccgatcgcttttgatttgagatcgggagtcagtttcttgactcaag 2165574  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 299
Target Start/End: Original strand, 32057141 - 32057178
Alignment:
Q  262 acttttgattcgaaatcggaagtcagtttcttgactca 299  Q
    |||||||||| || ||||||||||||||||||||||||    
T  32057141 acttttgatttgagatcggaagtcagtttcttgactca 32057178  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 198
Target Start/End: Original strand, 46879831 - 46879896
Alignment:
Q  134 gatcacttttacttcgagatcggaagttagtgtctagtttcaag-ttatgggatggttaaggtgtc 198  Q
    |||||||||| ||||||||||||||||||| ||| || ||| || || ||||||||||| ||||||    
T  46879831 gatcacttttgcttcgagatcggaagttagcgtccagcttcgagtttttgggatggttatggtgtc 46879896  T

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Target: scaffold0620 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 229 - 300
Target Start/End: Original strand, 3825 - 3896
Alignment:
Q  229 agtgatttgtttctaaagtctggtaagccggtgacttttgattcgaaatcggaagtcagtttcttgactcaa 300  Q
    |||||||||||| || ||||||||  |||| | | ||||||||||| ||||| |||||||||||||||||||    
T  3825 agtgatttgtttttagagtctggtgggccgatcaattttgattcgagatcgggagtcagtttcttgactcaa 3896  T

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Target: scaffold0572 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0572
Description:

Target: scaffold0572; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 297
Target Start/End: Complemental strand, 6359 - 6273
Alignment:
Q  211 ggagttgagggacgccctagtgatttgtttctaaagtctggtaagccggtgacttttgattcgaaatcggaagtcagtttcttgact 297  Q
    |||||||||||  | | |||||||||||||||| |||||||| ||||| | || ||||||||||   || |||||||||||||||||    
T  6359 ggagttgaggggtgacttagtgatttgtttctagagtctggtgagccgatcacatttgattcgaggacgaaagtcagtttcttgact 6273  T

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Target: scaffold0127 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 297
Target Start/End: Original strand, 31233 - 31319
Alignment:
Q  211 ggagttgagggacgccctagtgatttgtttctaaagtctggtaagccggtgacttttgattcgaaatcggaagtcagtttcttgact 297  Q
    |||||||||||  | | |||||||||||||||| |||||||| ||||| | || ||||||||||   || |||||||||||||||||    
T  31233 ggagttgaggggtgacttagtgatttgtttctagagtctggtgagccgatcacatttgattcgaggacgaaagtcagtttcttgact 31319  T

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Target: scaffold0036 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 400
Target Start/End: Complemental strand, 64282 - 64195
Alignment:
Q  313 tattttggtgtcttctacgacgaaccgaggattgattggtggtggaatccgaatgagtgttgaaatttggctcagttgtggtgatgag 400  Q
    |||||||| ||||||| ||||  || |||||||||| |||||||||||| |||| |||   |||||| ||||  ||||||||||||||    
T  64282 tattttggcgtcttctccgacagactgaggattgatcggtggtggaatctgaattagttcggaaattcggctatgttgtggtgatgag 64195  T

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Target: scaffold0036; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 400
Target Start/End: Complemental strand, 69424 - 69337
Alignment:
Q  313 tattttggtgtcttctacgacgaaccgaggattgattggtggtggaatccgaatgagtgttgaaatttggctcagttgtggtgatgag 400  Q
    |||||||| ||||||| ||||  || |||||||||| |||||||||||| |||| |||   |||||| ||||  ||||||||||||||    
T  69424 tattttggcgtcttctccgacagactgaggattgatcggtggtggaatctgaattagttcggaaattcggctatgttgtggtgatgag 69337  T

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Target: scaffold0200 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 231 - 289
Target Start/End: Original strand, 19380 - 19438
Alignment:
Q  231 tgatttgtttctaaagtctggtaagccggtgacttttgattcgaaatcggaagtcagtt 289  Q
    ||||||| | ||||||||||||  |||| | ||||||||||||| ||||||||||||||    
T  19380 tgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcggaagtcagtt 19438  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 169
Target Start/End: Complemental strand, 28765797 - 28765752
Alignment:
Q  124 ctggtaggccgatcacttttacttcgagatcggaagttagtgtcta 169  Q
    |||||||||||||||||||||||| ||||| | |||||| ||||||    
T  28765797 ctggtaggccgatcacttttactttgagattgaaagttactgtcta 28765752  T

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Target: scaffold0119 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 241 - 289
Target Start/End: Complemental strand, 42212 - 42164
Alignment:
Q  241 ctaaagtctggtaagccggtgacttttgattcgaaatcggaagtcagtt 289  Q
    ||||||||||||  |||| | ||||||||||||| ||||||||||||||    
T  42212 ctaaagtctggtgggccgatcacttttgattcgagatcggaagtcagtt 42164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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