View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16565_low_4 (Length: 595)
Name: NF16565_low_4
Description: NF16565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16565_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 11 - 576
Target Start/End: Original strand, 37976850 - 37977414
Alignment:
| Q |
11 |
tagcaaagggaaattagtcgatcatgaaacctgtattgttctggatcttccttcaatgcattaatataagctttgaagatggtatctcgctcctcttcac |
110 |
Q |
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| T |
37976850 |
tagcaaagggaaattagtcgatcatgaaacctgtattgttctggatcttccttcaatgcattaatataagctttgaagatggtatcacgctcctcttcac |
37976949 |
T |
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| Q |
111 |
tagaatacccttccatgagtttatcatagacagtgacaaaaccaagagcaaatacagaatcatattggtatgatgtcttgtatctcattaaatgatgttg |
210 |
Q |
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| T |
37976950 |
tagaatacccttccatgagtttatcatagacagtgacaaaaccaagagcaaatacagaatcatattggtatgatgtcttgtatctcattaaatgatgttg |
37977049 |
T |
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| Q |
211 |
aacaatgagctcctgcagcacattgttatagatgctcgggattggtcgtttatatgcctttaggaaatttagctttgtctcagaaacactaggaacatct |
310 |
Q |
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| T |
37977050 |
aacaatgagctcctgcagcacattgttatagatactcgggattggtcgtttatatgcctttaggaaatttagctttgtctcagaaacactaggaacatct |
37977149 |
T |
|
| Q |
311 |
gcagtagatgataacccatgaccaactaacaataataaggttcatcgtcttcttttatttatttagtcttccattttttgcagtaggtgttagaaacata |
410 |
Q |
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| T |
37977150 |
gcagtagatgataacccatgaccaactaacaataataaggttcattgtcttcttttatttatttagtcttccattttttgcagtaggtgttagaaacata |
37977249 |
T |
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| Q |
411 |
aacaaatttaatatnnnnnnnnnnntctccatgtcgtacactcatgcctatgttttgcaaactctatgatggactattttggtaggtggtctaccgtgga |
510 |
Q |
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| T |
37977250 |
aacaaacttaatat-aaaaaaaaattctccatgtcctacactcatgcctatgttttgcaaactctatgatggactattttggtaggtggtctaccgtgga |
37977348 |
T |
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| Q |
511 |
ctgaaacttgaaaatcgttggacatttcaatgatggttgaaactgtctttcgaaaatagaaggtct |
576 |
Q |
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| T |
37977349 |
ctgaaacttgaaaatcgttggacatttcaatgatggttgaaactgtctttcgaaaatagaaggtct |
37977414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 117; Significance: 3e-59; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 38 - 298
Target Start/End: Original strand, 15981537 - 15981797
Alignment:
| Q |
38 |
aacctgtattgttctggatcttccttcaatgcattaatataagctttgaagatggtatctcgctcctcttcactagaatacccttccatgagtttatcat |
137 |
Q |
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| T |
15981537 |
aacctgtattgggctggatcttccttcaatgcgttaatgtatgcttggaagatggcatctctgtcctcatcactaggatacccttccatgagttggtcat |
15981636 |
T |
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| Q |
138 |
agacagtgacaaaaccaagagcaaatacagaatcatattggtatgatgtcttgtatctcattaaatgatgttgaacaatgagctcctgcagcacattgtt |
237 |
Q |
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| T |
15981637 |
atacagtgacaaagccaagagcaaatacaggatcataacggtatgacttcttgtatctcatcaaatgttgctggacaatgagctcctgtagcacggagtt |
15981736 |
T |
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| Q |
238 |
atagatgctcgggattggtcgtttatatgcctttaggaaatttagctttgtctcagaaaca |
298 |
Q |
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| T |
15981737 |
atagatactaggtatcggtcgcttatatgccttgagaaaatttaactttgtctcagaaaca |
15981797 |
T |
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