View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16565_low_5 (Length: 547)
Name: NF16565_low_5
Description: NF16565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16565_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 448; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 10 - 543
Target Start/End: Original strand, 43989312 - 43989845
Alignment:
| Q |
10 |
gagagatgaagcgacaaagaaggagtggacggcgcagacatagtgaccatggacagtggcgaaagagaacgaattgaacagagaagaagaataaggaaaa |
109 |
Q |
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| T |
43989312 |
gagagaagaagcgacaaagaaggagtggacggcgcagacacagtgaccatggacagtggcgaaagagaacgaattgaacagagaagaagaataaggaaaa |
43989411 |
T |
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| Q |
110 |
ggtgtgggacgacatgatcgtaagtcaaagaaggagaacaaggcaaccgaggacaatatgacaatgggctctaaaacatgaggaattcnnnnnnngctga |
209 |
Q |
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| T |
43989412 |
ggtgtgggacgacatgatcgtaagtcaaagaaggagaacaaggcaaccgaggacaatatgacaatgggctctaaaacatgaggaattctttttttgctga |
43989511 |
T |
|
| Q |
210 |
gacacgggttacttacataagaagtatcttttaagaaacatgtctccttgggtttgtttaccgggtggtcgatttacaatagnnnnnnnttgtcacctga |
309 |
Q |
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| T |
43989512 |
gacacgggttacttacataagaagtatcttttaagaaacatgtctccttgggtttgtttaccgggtagtcgatttacaatagaaaaaaattgtcacctga |
43989611 |
T |
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| Q |
310 |
acctattgtttttggttcttgacagtttggatttggttttgactcgaactaataaacaacaggtaatttaccagttgagttggtttgtcaggttcaatga |
409 |
Q |
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| T |
43989612 |
acctattgtttttggttcttgacagtttggatttggttttgactcgaactaataaacaacaggtaatttaccagttgagttggtttgtcaggttcaatga |
43989711 |
T |
|
| Q |
410 |
attcatcatctgggtcgacgtcactcactaccagcaagtaattaagaagcagtctattacaaaaagcatcagccagtaagcgtttcagtcacaagaagtc |
509 |
Q |
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| T |
43989712 |
attcatcatctgggtcgacgtcactcactaccagcaagtaattaagaagcagtctattacaaaaagcagcagccagtaatctttgcagacacaagaagtc |
43989811 |
T |
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| Q |
510 |
gataactaaccagaatcaactttaggaaaaccat |
543 |
Q |
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| T |
43989812 |
gataactaaccagaagcaactatagtaaaaccat |
43989845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 154
Target Start/End: Complemental strand, 43918590 - 43918528
Alignment:
| Q |
92 |
gaagaagaataaggaaaaggtgtgggacgacatgatcgtaagtcaaagaaggagaacaaggca |
154 |
Q |
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| T |
43918590 |
gaagaagaataaggagaaggcatgggacgacatgatcgtaggtcgaaggaggagaagaaggca |
43918528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 437 - 487
Target Start/End: Original strand, 44003300 - 44003350
Alignment:
| Q |
437 |
ctaccagcaagtaattaagaagcagtctattacaaaaagcatcagccagta |
487 |
Q |
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| T |
44003300 |
ctacccgcaagtaattatgcagcagtctgttataaaaagcatcagccagta |
44003350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 300 - 380
Target Start/End: Original strand, 8831036 - 8831116
Alignment:
| Q |
300 |
tgtcacctgaacctattgtttttggttcttgacagtttggatttggttttgactcgaactaataaacaacaggtaatttac |
380 |
Q |
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| T |
8831036 |
tgtcacatgtacctattgtgtttggttcttgacaatttcaatctggttttgacccgaaccaataaacaacgggtgatttac |
8831116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 436 - 521
Target Start/End: Original strand, 8831177 - 8831262
Alignment:
| Q |
436 |
actaccagcaagtaattaagaagcagtctattacaaaaagcatcagccagtaagcgtttcagtcacaagaagtcgataactaacca |
521 |
Q |
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| T |
8831177 |
actaccagcgagtaattatgcagcagcctattacaaaaggcagcagccagtagtctttgtagacacaagaagtcaataactaacca |
8831262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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