View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16565_low_6 (Length: 540)

Name: NF16565_low_6
Description: NF16565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16565_low_6
NF16565_low_6
[»] chr6 (15 HSPs)
chr6 (121-344)||(27703108-27703332)
chr6 (206-374)||(26852469-26852640)
chr6 (72-169)||(27423933-27424030)
chr6 (121-169)||(25486946-25486994)
chr6 (121-169)||(26146544-26146592)
chr6 (221-304)||(27661809-27661892)
chr6 (161-210)||(26852400-26852449)
chr6 (169-296)||(25487010-25487134)
chr6 (221-285)||(27079162-27079226)
chr6 (210-296)||(26059696-26059783)
chr6 (210-296)||(26079666-26079753)
chr6 (121-169)||(26059582-26059630)
chr6 (121-169)||(26079552-26079600)
chr6 (121-154)||(25583230-25583263)
chr6 (324-374)||(26888974-26889026)
[»] scaffold0003 (1 HSPs)
scaffold0003 (72-169)||(63333-63430)
[»] chr8 (1 HSPs)
chr8 (409-445)||(43300540-43300576)


Alignment Details
Target: chr6 (Bit Score: 133; Significance: 7e-69; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 121 - 344
Target Start/End: Complemental strand, 27703332 - 27703108
Alignment:
Q  121 agaaagatgttgggtacattccttggtctaggtccatcacaaagttaactctcaatcttaacattggacctttgtggtttgctgtttacaaatgttgatt 220  Q
    |||| ||||| |||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||  |||||| ||| |||||||||||||||||||    
T  27703332 agaatgatgtggggtacattccttggtctagctccatcataaagttaactctcaatctcaacattggaggtttgtgattttctgtttacaaatgttgatt 27703233  T
Q  221 a-tttctgtatatagtcaaatacaaattctttgtttctagttggagaagtttttcaagtgatgagacataatgtaagattttgtggatgatgtttgtgta 319  Q
    | ||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||| |||||| |||| || ||||||||| ||||| ||||||||| |    
T  27703232 aatttctgtatatagtcaattacaaattcgttgtttctagttggagaagttattcaaatgatgatacatgatttaagattttctggattatgtttgtgca 27703133  T
Q  320 ctcttaaaatattgtttcaatttac 344  Q
     ||||||||||||||||| ||||||    
T  27703132 atcttaaaatattgtttctatttac 27703108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 206 - 374
Target Start/End: Original strand, 26852469 - 26852640
Alignment:
Q  206 ttacaaatgttgatta-tttctgtatatagtcaaatacaaattctttgtttctagttggagaagtttttcaagtgatgagacataatgtaagattttgtg 304  Q
    |||||||||||||||| ||||||||||||||||| | ||||||| ||||||||||||||||||||||||||| ||||||||||| |||| |||||||||     
T  26852469 ttacaaatgttgattaatttctgtatatagtcaattgcaaattcgttgtttctagttggagaagtttttcaaatgatgagacatgatgtgagattttgtt 26852568  T
Q  305 gatgatgtttgtgtactcttaaaatattgtttcaatttactttgga--atgctttgtaggacaaacacttct 374  Q
    ||||||||||||| |||||||||||||||||||||||||| || ||  ||||||||||| ||||||||||||    
T  26852569 gatgatgtttgtgcactcttaaaatattgtttcaatttacatttgaggatgctttgtagcacaaacacttct 26852640  T

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Target: chr6; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 72 - 169
Target Start/End: Complemental strand, 27424030 - 27423933
Alignment:
Q  72 tcagagaaagatgtgggtgcaacaaaaggaactgatgaaagaagagaatagaaagatgttgggtacattccttggtctaggtccatcacaaagttaac 169  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||    
T  27424030 tcagagaaagatgtgggtgcaacaaaaggaattgatgaaagaagagaatacaaagatgttgggtacattccttggtctaggttcatcataaagttaac 27423933  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 25486946 - 25486994
Alignment:
Q  121 agaaagatgttgggtacattccttggtctaggtccatcacaaagttaac 169  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||    
T  25486946 agaaagatgttgggtacattccttagtctaggtccatcataaagttaac 25486994  T

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Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 26146544 - 26146592
Alignment:
Q  121 agaaagatgttgggtacattccttggtctaggtccatcacaaagttaac 169  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||    
T  26146544 agaaagatgttgggtacattccttagtctaggtccatcataaagttaac 26146592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 221 - 304
Target Start/End: Complemental strand, 27661892 - 27661809
Alignment:
Q  221 atttctgtatatagtcaaatacaaattctttgtttctagttggagaagtttttcaagtgatgagacataatgtaagattttgtg 304  Q
    |||||||||||||||||| ||||||||| |||||| ||| ||||||||||  | || | ||||||||| |||||||||| ||||    
T  27661892 atttctgtatatagtcaattacaaattcattgtttatagatggagaagttgcttaaatcatgagacatgatgtaagattatgtg 27661809  T

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Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 26852400 - 26852449
Alignment:
Q  161 aaagttaactctcaatcttaacattggacctttgtggtttgctgtttaca 210  Q
    |||||||||||||||||| |||||||||  ||||||||||||||||||||    
T  26852400 aaagttaactctcaatctcaacattggaggtttgtggtttgctgtttaca 26852449  T

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Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 169 - 296
Target Start/End: Original strand, 25487010 - 25487134
Alignment:
Q  169 ctctcaatcttaacattggacctttgtggtttgctgtttacaaatgttgattatttctgtatatagtcaaatacaaattctttgtttctagttggagaag 268  Q
    |||||||||| ||||||| |  |||||| |||| ||| ||  ||||||||  |||||||||||||||||  |||||||||  ||||||||||||||||||    
T  25487010 ctctcaatctcaacattgcaggtttgtgctttgttgtata--aatgttgaa-atttctgtatatagtcagttacaaattcaatgtttctagttggagaag 25487106  T
Q  269 tttttcaagtgatgagacataatgtaag 296  Q
    ||| | ||   ||||||||| |||||||    
T  25487107 tttcttaaaccatgagacatgatgtaag 25487134  T

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Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 221 - 285
Target Start/End: Original strand, 27079162 - 27079226
Alignment:
Q  221 atttctgtatatagtcaaatacaaattctttgtttctagttggagaagtttttcaagtgatgaga 285  Q
    ||||||||||||| |||| ||||||||  ||||||||||||||| |||||||| || ||||||||    
T  27079162 atttctgtatatattcaattacaaatttgttgtttctagttggacaagttttttaaatgatgaga 27079226  T

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Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 210 - 296
Target Start/End: Original strand, 26059696 - 26059783
Alignment:
Q  210 aaatgttgatta-tttctgtatatagtcaaatacaaattctttgtttctagttggagaagtttttcaagtgatgagacataatgtaag 296  Q
    |||||||||||| ||||||||| ||||||  |||||||||  ||||||||||||||||||||| | ||   ||||||||| |||||||    
T  26059696 aaatgttgattaatttctgtatgtagtcagttacaaattcaatgtttctagttggagaagtttcttaaaccatgagacatgatgtaag 26059783  T

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Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 210 - 296
Target Start/End: Original strand, 26079666 - 26079753
Alignment:
Q  210 aaatgttgatta-tttctgtatatagtcaaatacaaattctttgtttctagttggagaagtttttcaagtgatgagacataatgtaag 296  Q
    |||||||||||| ||||||||| ||||||  |||||||||  ||||||||||||||||||||| | ||   ||||||||| |||||||    
T  26079666 aaatgttgattaatttctgtatgtagtcagttacaaattcaatgtttctagttggagaagtttcttaaaccatgagacatgatgtaag 26079753  T

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Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 26059582 - 26059630
Alignment:
Q  121 agaaagatgttgggtacattccttggtctaggtccatcacaaagttaac 169  Q
    |||||||||| |||||||||||| ||| ||||||||||| |||||||||    
T  26059582 agaaagatgtggggtacattcctcggtttaggtccatcataaagttaac 26059630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 26079552 - 26079600
Alignment:
Q  121 agaaagatgttgggtacattccttggtctaggtccatcacaaagttaac 169  Q
    |||||||||| |||||||||||| ||| ||||||||||| |||||||||    
T  26079552 agaaagatgtggggtacattcctcggtttaggtccatcataaagttaac 26079600  T

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Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 154
Target Start/End: Original strand, 25583230 - 25583263
Alignment:
Q  121 agaaagatgttgggtacattccttggtctaggtc 154  Q
    ||||||||||||||||||||||||||| ||||||    
T  25583230 agaaagatgttgggtacattccttggtttaggtc 25583263  T

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Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 374
Target Start/End: Original strand, 26888974 - 26889026
Alignment:
Q  324 taaaatattgtttcaatttactttgga--atgctttgtaggacaaacacttct 374  Q
    |||||||||||||||||||||| ||||  ||||||||||| ||| ||||||||    
T  26888974 taaaatattgtttcaatttactgtggaagatgctttgtagcacatacacttct 26889026  T

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Target: scaffold0003 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 72 - 169
Target Start/End: Original strand, 63333 - 63430
Alignment:
Q  72 tcagagaaagatgtgggtgcaacaaaaggaactgatgaaagaagagaatagaaagatgttgggtacattccttggtctaggtccatcacaaagttaac 169  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||    
T  63333 tcagagaaagatgtgggtgcaacaaaaggaattgatgaaagaagagaatacaaagatgttgggtacattccttggtctaggttcatcataaagttaac 63430  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 409 - 445
Target Start/End: Complemental strand, 43300576 - 43300540
Alignment:
Q  409 gtgtccaacatcgacacatgtgactacattcaaatat 445  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  43300576 gtgtccaacatcgacacgtgtgattacattcaaatat 43300540  T

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