View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16566_high_15 (Length: 455)
Name: NF16566_high_15
Description: NF16566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16566_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 13 - 447
Target Start/End: Complemental strand, 29458465 - 29458031
Alignment:
| Q |
13 |
tcatcatctccggcattgattcacactgaatccaatcacgagactccatgtcgtagatctccactgctaaaggatcgtcctcaaagtcacataccccacc |
112 |
Q |
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| T |
29458465 |
tcatcatctccggcattgattcacaccgaatccaatcacgagactccatgtcgtagatctccactgctaaaggatcgtcctcaaagtcacataccccacc |
29458366 |
T |
|
| Q |
113 |
agcaacaacgatgcactttcccacacgtgcaacaatgggatccacacgccaaacacgtggtgatggcacgtggttccacgtaaggtggagtggatcgaag |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
29458365 |
agcaacaacgatgcactttcccacacgtgcaacaatgggatccacacgccaaacacgtggtgatggcacgtggttccacgtaaggtggagcggatcaaag |
29458266 |
T |
|
| Q |
213 |
gagaaggaaaattcagttggagaaagtgtgtaaaggagcgtggagtgtgatgaccgtaaagctgaggtgtgattaatttgtggcgcgtgaatttggatcc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
29458265 |
gagaaggaaaattcagttggagaaagtgtgtaaaggagcgtggagtgtgatgaccgtaaagctggggtgtgattaatttgtggcgcgtgaatttggatcc |
29458166 |
T |
|
| Q |
313 |
acgttaaagagcgtgggtcataggcatatgttgtggtcacgtggggagctcgggggttttgagtgtgaaccgtgagccacggcttcacggggttgacgtg |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
29458165 |
acgttaaagagcgtgggtcataggcatatgttgtggtcacgtggggagctcgggggttttgagtgtgaaccgtgagccacggcttcacggggttgacatg |
29458066 |
T |
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| Q |
413 |
gcggagggagctcaatactgcatggttcctttgct |
447 |
Q |
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||||||||||||||||||||||||||||| ||||| |
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| T |
29458065 |
gcggagggagctcaatactgcatggttccattgct |
29458031 |
T |
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