View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16566_high_16 (Length: 451)
Name: NF16566_high_16
Description: NF16566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16566_high_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 33411445 - 33411237
Alignment:
| Q |
1 |
atgcattttttgcagtgttgaacttcttgaacttggctttcttcgcgtttgttacaaggttttatgtatatagggctgaagtttcggattctatagacat |
100 |
Q |
| |
|
|||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33411445 |
atgcgtttttcgcggtgttgaacttcttgaacttggctttcttcgcgtttgttacaaggttttatgtatatagggctgaagtttcggattctatagacat |
33411346 |
T |
|
| Q |
101 |
gcttgccaatgaactgaaggaaaagaaagaggctaaccatgtgaaccttatagagtaagtgattggatctattaggaagaatgtttatgatcaaaaaatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33411345 |
gcttgccaatgaactgaaggaaaagaaagaggctaaccatgtgaaccttatagagtaagtgattggatctattaggaagaatgtttatgatcaaaaaatt |
33411246 |
T |
|
| Q |
201 |
ccaaatttg |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
33411245 |
ccaaatttg |
33411237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 225 - 436
Target Start/End: Complemental strand, 33411244 - 33411034
Alignment:
| Q |
225 |
caaatttggatggccaaagaactataattatgtatatattttgtgtgtgatggttttggtgatcggaaagccactttagaacataattctaatcaagtta |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
33411244 |
caaatttggatggccaaagaactataattatgtatatattttgtgtgtgatggttttggtgactggaaagccactttagaacataattctaatcaagtta |
33411145 |
T |
|
| Q |
325 |
gttagagtaatccattccattgtgtgatcatttgtccagtgcagccatattgttattgtttttggattttgagaattcacatagtaggctttgctgaaaa |
424 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
33411144 |
gttagaggaatccattccagtgtgtgatcatttgtccagtgcagccatattgttattgtttttgaattttgagaattcacatagtaggc-ttgctgaaaa |
33411046 |
T |
|
| Q |
425 |
tcatgaatttag |
436 |
Q |
| |
|
|||||||||||| |
|
|
| T |
33411045 |
tcatgaatttag |
33411034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University