View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16566_high_22 (Length: 398)
Name: NF16566_high_22
Description: NF16566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16566_high_22 |
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Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 20 - 384
Target Start/End: Original strand, 39237927 - 39238291
Alignment:
| Q |
20 |
tttcattctctgccatagcaattgctatggccaaaagtacccatgacaaaacatcattaatgagtgcagatgaaagagcaaccctgcccaactctgtgtt |
119 |
Q |
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| T |
39237927 |
tttcattctctgccatagcaattgctatggccaaaagtacccatgacaaaacatcattaatgagtgcagatgaaagagcaaccctgcccaactctgtgtt |
39238026 |
T |
|
| Q |
120 |
gatcagttttagctctgcaaggatcctagcaagaacaggaaatgcagtaacagaaagaacaacaccaagcattagaacaaaagctcctacataagctttt |
219 |
Q |
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| T |
39238027 |
gatcagttttagctctgcaaggatcctagcaagaacaggaaatgcagtaacagaaagaacaacaccaagcattagaacaaaagctcctacataagctttt |
39238126 |
T |
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| Q |
220 |
tcggtgttttttaacaaaaagacggaaaatagtgctcctgttccgaatggtaatatcataccagctactgctatggtaattgattttctacctatgcgtc |
319 |
Q |
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| T |
39238127 |
tcggtgttttttaacaaaaagatggaaaatagtgctcctgttccgaatggtaatatcataccagctactgctatggtaattgattttctacctatgcgtc |
39238226 |
T |
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| Q |
320 |
gtagtgcagatgcatccatgcctactccaaccaagaatagaaaatataaaagaccaacgtttgcc |
384 |
Q |
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| T |
39238227 |
gtagtgcagatgcatccatgcctactccaaccaagaatagaaaatataaaagaccaacgtttgcc |
39238291 |
T |
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Back To:
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Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 70 - 177
Target Start/End: Original strand, 44056105 - 44056212
Alignment:
| Q |
70 |
acatcattaatgagtgcagatgaaagagcaaccctgcccaactctgtgttgatcagttttagctctgcaaggatcctagcaagaacaggaaatgcagtaa |
169 |
Q |
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|||||| | |||||||||| |||||||||| | | || | ||||||||||| ||||||||||| || ||||||||||| ||||||||||||||||| | |
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| T |
44056105 |
acatcactgatgagtgcagccgaaagagcaagctttcctatatctgtgttgatgagttttagctcggcgaggatcctagctagaacaggaaatgcagtga |
44056204 |
T |
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| Q |
170 |
cagaaaga |
177 |
Q |
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|||||||| |
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| T |
44056205 |
cagaaaga |
44056212 |
T |
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