View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16566_high_32 (Length: 332)
Name: NF16566_high_32
Description: NF16566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16566_high_32 |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 317
Target Start/End: Original strand, 38819875 - 38820162
Alignment:
| Q |
18 |
ggaacttgtgtatagtatggtccaatggaaaaactcaatacaagaccctataattttttatatcaaaatgattaatcttgtgatagggaacataaaccaa |
117 |
Q |
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| T |
38819875 |
ggaacttgtgtatagtatggtccaatggaaaaactcaatacaagaccctataattttttttatcaaaatgattaatcttgtgatagggaacataaa---- |
38819970 |
T |
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| Q |
118 |
tactaaagcttttgttgatcaaataaaacttttgttcattataaccttggcttaagcaacataaaccaatttaatcatctccctatcagcaacacctcca |
217 |
Q |
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| T |
38819971 |
-------gcttttgttgatcaaataaaactttcgttcattataacctaggcttaagcaacataaaccaatttaatcacctccctatcagcaacacctcca |
38820063 |
T |
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| Q |
218 |
cattttgttaacttatgatcaacaacttccatgattttcccttgtctcactttctcattaacaatcttaggaaaatactgccatttccattttatgttgt |
317 |
Q |
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| T |
38820064 |
cattttgttaacttatgatcaacaacttccatg-ttttcccttgtttcactttctcattaacaatcttaggaaaatactgccatttccattttatgttgt |
38820162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 171 - 310
Target Start/End: Original strand, 23466363 - 23466502
Alignment:
| Q |
171 |
aagcaacataaaccaatttaatcatctccctatcagcaacacctccacattttgttaacttatgatcaacaacttccatgattttcccttgtctcacttt |
270 |
Q |
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| T |
23466363 |
aagcaacataaaccaatttaatcacctccctctcatcaacaccaccacattccattaacctatgatcaacaatttccatgattttcccttgtttcacttt |
23466462 |
T |
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| Q |
271 |
ctcattaacaatcttaggaaaatactgccatttccatttt |
310 |
Q |
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| T |
23466463 |
ctcgtttacaatcttcggaaaatattgccatttccttttt |
23466502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 12085112 - 12085152
Alignment:
| Q |
21 |
acttgtgtatagtatggtccaatggaaaaactcaatacaag |
61 |
Q |
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| T |
12085112 |
acttgtgtatagtatggtccaacggaaaaaatcaatacaag |
12085152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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