View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16566_high_34 (Length: 325)
Name: NF16566_high_34
Description: NF16566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16566_high_34 |
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Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 13 - 306
Target Start/End: Complemental strand, 30314564 - 30314271
Alignment:
| Q |
13 |
gagaagaaggattgttggttttgatttccagacaatgagaaagactgttcgaaaggaagaacaatgataaatggtaagagatcgaggaaaaagtagaaaa |
112 |
Q |
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| T |
30314564 |
gagaagaaggattgttggttttgatttccagacaatgagaaagactgttcgaaaggaagaacaatgataaatggtaagagatcgatgaaaaagtagaaaa |
30314465 |
T |
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| Q |
113 |
gaaaacgtggttataaatgtatagatggtttaaaattgtgcatgcagttataattagtcaattccgatttaaacatttatattaagataaaatgtgcgaa |
212 |
Q |
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| T |
30314464 |
gaaaatgtggttataaatgtatagatggtttaaaattgtgcatgcagttataattagtcaattccgttttaaacatttatattaagataaaatgtgcgaa |
30314365 |
T |
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| Q |
213 |
aatgaaaccaatgcggtgtcaatttctatattgtgatatgctgtagagacctctaggcgccgttgcataccacagtttaaaactatgatatgta |
306 |
Q |
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| T |
30314364 |
aatgaaaccaatgcggtgtcaatttctatattgtgatatgctgtagagacctctaggcgccgttgcataccacagtttaaaactatgatatgta |
30314271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 13 - 292
Target Start/End: Complemental strand, 30303676 - 30303388
Alignment:
| Q |
13 |
gagaagaaggattgttggttttgatttccagacaatgagaaagactgttcgaaagga---------agaacaatgataaatggtaagagatcgaggaaaa |
103 |
Q |
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| T |
30303676 |
gagaagaaggactgttggttttgacttccagacaatgagaaagactgttggaaaggagtcaaagacagaacaatgataaatggtaagagatcgaataaaa |
30303577 |
T |
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| Q |
104 |
agtagaaaagaaaacgtggttataaatgtatagatggtttaaaattgtgcatgcagttataattagtcaattccgatttaaacatttatattaagataaa |
203 |
Q |
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| T |
30303576 |
agcagaaaagaaaatgtggatatatatgtctagatggttttaaattgtgcatgcagttataattagtcaatcacgttacagacatttatattaagataga |
30303477 |
T |
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| Q |
204 |
atgtgcgaaaatgaaaccaatgcggtgtcaatttctatattgtgatatgctgtagagacctctaggcgccgttgcataccacagtttaa |
292 |
Q |
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| T |
30303476 |
atatgagaaaatgagaccaatgcggtatcaatttctctattgtgatatgttgtacagacatctagacgatgttgcataccgcaatttaa |
30303388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 109 - 307
Target Start/End: Complemental strand, 30290902 - 30290704
Alignment:
| Q |
109 |
aaaagaaaacgtggttataaatgtatagatggtttaaaattgtgcatgcagttataattagtcaattccgatttaaacatttatattaagataaaatgtg |
208 |
Q |
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| T |
30290902 |
aaaagaaaatgtggatatatatgtatagatggttttaaattgtgcatgcagttataattagtcaattccgttacaaacatttaatataagatcaaatgtg |
30290803 |
T |
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| Q |
209 |
cgaaaatgaaaccaatgcggtgtcaatttctatattgtgatatgctgtagagacctctaggcgccgttgcataccacagtttaaaactatgatatgtat |
307 |
Q |
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| T |
30290802 |
cgaagatgagaccaatgcggtatcaatttctatattgtgatatgttgtagaggtctctagatgctgttgcataccgcaatttaaaaatgtaatatgtat |
30290704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 30291022 - 30290930
Alignment:
| Q |
13 |
gagaagaaggattgttggttttgatttccagacaatgagaaagactgttcgaaaggaagaacaatgataaatggtaagagatcgaggaaaaag |
105 |
Q |
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| T |
30291022 |
gagaagaaggattgttggttttgatttccagacaatgagaaagactgttggaaaggaagaacaatgataaatggtaagagatcgaagaaaaag |
30290930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 295
Target Start/End: Complemental strand, 30298333 - 30298221
Alignment:
| Q |
183 |
aaacatttatattaagataaaatgtgcgaaaatgaaaccaatgcggtgtcaatttctatattgtgatatgctgtagagacctctaggcgccgttgcatac |
282 |
Q |
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|||||||||||| ||| | |||||| ||||||| ||||||||| | || |||| |||||||||||||| ||||||| ||||||| ||| ||||||||| |
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| T |
30298333 |
aaacatttatatatagaaataatgtgagaaaatgtgaccaatgcgttatcgatttttatattgtgatatgttgtagaggcctctagacgctgttgcatac |
30298234 |
T |
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| Q |
283 |
cacagtttaaaac |
295 |
Q |
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| T |
30298233 |
cgcaatttaaaac |
30298221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 30298493 - 30298437
Alignment:
| Q |
13 |
gagaagaaggattgttggttttgatttccagacaatgagaaagactgttcgaaagga |
69 |
Q |
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| T |
30298493 |
gagaagaaggactgttggttttgacttccagacaatgagaaagactgttggaaagga |
30298437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 30286043 - 30285995
Alignment:
| Q |
13 |
gagaagaaggattgttggttttgatttccagacaatgagaaagactgtt |
61 |
Q |
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|||| ||||||||||||||||| | || ||||||||||||||||||||| |
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| T |
30286043 |
gagaggaaggattgttggttttcactttcagacaatgagaaagactgtt |
30285995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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