View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16566_high_4 (Length: 642)
Name: NF16566_high_4
Description: NF16566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16566_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 513; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 1 - 612
Target Start/End: Complemental strand, 29547111 - 29546489
Alignment:
| Q |
1 |
attaccatatattggttcttatattttcatctcttcttttccttttgcttccggtgttggttggttatatacatgccatcagcatctatgactgcgaagg |
100 |
Q |
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| T |
29547111 |
attaccatatattggttcttatattttcatctcttcttttccttttgcttccggtgttggttggttatgtacatgccatcagcatctatgactgtgaagg |
29547012 |
T |
|
| Q |
101 |
actgtccagtgtttggtggttgttgacctgatttttgaacatagccacgaattaacctttgttgatttaataatcatagatcaccaactgcagtagtatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29547011 |
actgtccagtgtttggtggttgttgacctgatttttgaacatagccacgaattaacctttgttgatttaataatcatagatcaccaactgcagtagtatt |
29546912 |
T |
|
| Q |
201 |
gctagatagaatagcttggttcggtcttttgctttcgaagtatgtaggatgctccttttttgttccactgctactggctgtctgcttttttgtcgtttat |
300 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
29546911 |
gctagctagaatagcttggttcggtcttttgctttcgaagtatgtaggatgctccttttttgttccactgctactggctttctgcttttttgtcgtttat |
29546812 |
T |
|
| Q |
301 |
gtgttcctgcatatttagcttagcaaatttttgcaaaacattagtagaaaactgttaggatttatagggacaatttccaggattgttgttat---tatgt |
397 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29546811 |
gtgttcctgcatatttagcttagcaaaattttgcaaaacattagtagaaaactgttaggatttatagggacaatttccaggattgttgttattaatatgt |
29546712 |
T |
|
| Q |
398 |
ttttatcttgtataattcttctaccatatctgat-------aaccatacccttaatttattatgataatcatcagatttaggcacaggtt--aggacttt |
488 |
Q |
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|||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
29546711 |
ttttatcttgtacaattcttctaccatatctgatatatctcaaccatacccttaatttattatgataatcatcagatttaggcacaggtttagggacttt |
29546612 |
T |
|
| Q |
489 |
ataacaagcagaatcgttacgtcctaacctaataaaccacatagatnnnnnnnnttggggaagcttttcatgtctatccataacataccttattcggaac |
588 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29546611 |
ataacaagcagaatcgttacgtcctaacctaataaaccacataga-aaaaaaaattggggaagcttttcatgtctatccataacataccttattcggaac |
29546513 |
T |
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| Q |
589 |
tacctatagcaattccagttgtta |
612 |
Q |
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|||||||||||||||||||||||| |
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| T |
29546512 |
tacctatagcaattccagttgtta |
29546489 |
T |
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