View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16566_high_6 (Length: 589)
Name: NF16566_high_6
Description: NF16566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16566_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 19 - 572
Target Start/End: Complemental strand, 3922764 - 3922211
Alignment:
| Q |
19 |
tttaagcgaggcggaaccagcacttagggaagaagttgtgtcttatatgcttgatatgagatcagatatgtggagtatgagaaaaggaatagcaaactat |
118 |
Q |
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| T |
3922764 |
tttaagcgaggcggaaccggcacttagggaagaagttgtgtcttatatgcttgatatgagatcagatatgtggagtatgagaaaaggaatagcaaactat |
3922665 |
T |
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| Q |
119 |
aacaggatcatgagtcttattagttacnnnnnnnnnnnnnggaaatggttagaggacataaggcaatggaagaatccaattgaagcagtgctttttcata |
218 |
Q |
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| T |
3922664 |
aacaggatcatgagtcttattagttacttttttgctttttggaaatggttagaggacataaggcaatggaagaatccaattgaagcagtgctttttcata |
3922565 |
T |
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| Q |
219 |
ttttttgcttatgtgtgcttttgtatccagagccaatgatacctttggtgagtttctatcttttcaagattggtttggataattataatttcaagaagca |
318 |
Q |
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| T |
3922564 |
ttttttgcttatgtgtgcttttgtatccagagccaatgatacctttggtgagtttctatcttttcaagattggtttggataattataatttcaagaagca |
3922465 |
T |
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| Q |
319 |
tgagcatccttgtcacatagatgcaacattatctggtgctgatacaacaaattatgatgatttagaagaagaacttgatttctttccaactcaaattgga |
418 |
Q |
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| T |
3922464 |
tgagcatccttgtcacatagatgcaacattatctggtgctgatacaacaaattatgatgatttagaagaagaacttgttttctttccaactcaaattgga |
3922365 |
T |
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| Q |
419 |
ggtgaacatttgagaaggaggtatgataggttgagagtcattggtaggaatggacaaaaaagggttgatgaattggccaccattttagaaaagctacaat |
518 |
Q |
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| T |
3922364 |
ggtgaacatttgagaaggaggtatgataggttgagagtcattggtaggaatggacaaaaaagggttgatgaattggccaccattttagaaaagctacaat |
3922265 |
T |
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| Q |
519 |
ctctgatcagttggagggatccaagagctacatttatatttttggtgttctgtg |
572 |
Q |
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| T |
3922264 |
ctctgatcagttggagggatccaagagctacatttatatttttggtgttctgtg |
3922211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 199 - 541
Target Start/End: Original strand, 34958057 - 34958404
Alignment:
| Q |
199 |
tgaagcagtgctttttcatattttttgcttatgtgtgcttttgtatccagagccaatgatacctttggtgagtttctatcttttcaagattggtttggat |
298 |
Q |
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| T |
34958057 |
tgaaacagtgctttttcatattttttgcttatgtgtgcttttgtatccagagccaatgatacctttggtgagtttctatcttttcaagattggtttggat |
34958156 |
T |
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| Q |
299 |
aattataatttcaagaagcatgagcatccttgtcacatagatgcaacatta-----tctggtgctgatacaacaaattatgatgatttagaagaagaact |
393 |
Q |
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| T |
34958157 |
aattataatttcaaaaagcatgagcatccttgtcacatagatgcaacattatattatctggtgctgatacaacaaattctgatgatttagaagaagaact |
34958256 |
T |
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| Q |
394 |
tgatttctttccaactcaaattggaggtgaacatttgagaaggaggtatgataggttgagagtcattggtaggaatggacaaaaaagggttgatgaattg |
493 |
Q |
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| T |
34958257 |
tgatttctttccaactcaaactggaggtgaagatttgagaaggaggtatgataggttgagagtcattggcaggaatgcacaaaaaagggttgatcaatta |
34958356 |
T |
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| Q |
494 |
gccaccattttagaaaagctacaatctctgatcagttggagggatcca |
541 |
Q |
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|| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34958357 |
gctaccattttagaaaagctacaatttctgatcagttggagggatcca |
34958404 |
T |
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