View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16566_low_1 (Length: 787)

Name: NF16566_low_1
Description: NF16566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16566_low_1
NF16566_low_1
[»] chr6 (5 HSPs)
chr6 (260-778)||(27159354-27159877)
chr6 (19-206)||(27159919-27160106)
chr6 (293-339)||(20846120-20846166)
chr6 (292-337)||(18904338-18904383)
chr6 (63-120)||(26910958-26911015)
[»] chr4 (5 HSPs)
chr4 (61-119)||(27441288-27441346)
chr4 (283-337)||(28715753-28715808)
chr4 (61-136)||(27429855-27429930)
chr4 (61-136)||(27444059-27444134)
chr4 (292-341)||(1817228-1817277)
[»] chr2 (3 HSPs)
chr2 (291-339)||(39635372-39635420)
chr2 (291-342)||(36748958-36749009)
chr2 (302-341)||(36845191-36845230)
[»] chr3 (5 HSPs)
chr3 (260-337)||(46767382-46767461)
chr3 (292-341)||(9114084-9114133)
chr3 (260-331)||(9493090-9493161)
chr3 (292-342)||(4807992-4808042)
chr3 (292-341)||(25883936-25883985)
[»] chr5 (3 HSPs)
chr5 (292-341)||(39799978-39800027)
chr5 (292-341)||(6734687-6734736)
chr5 (292-341)||(33372950-33372999)
[»] chr1 (6 HSPs)
chr1 (292-336)||(13763834-13763878)
chr1 (281-341)||(18101510-18101570)
chr1 (283-341)||(3229662-3229721)
chr1 (302-341)||(37094706-37094745)
chr1 (292-341)||(12613250-12613299)
chr1 (292-337)||(18512527-18512572)
[»] chr8 (1 HSPs)
chr8 (292-341)||(34873159-34873208)


Alignment Details
Target: chr6 (Bit Score: 363; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 260 - 778
Target Start/End: Complemental strand, 27159877 - 27159354
Alignment:
Q  260 atatgcaggggatgagattcaaacccggacatccacttctctacatttaaaatgtgtgatcttcagtcactagactacttgatnnnnnnnnn-----tca 354  Q
    |||||||||||||||||||| |||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||| |||||              |||    
T  27159877 atatgcaggggatgagattcgaacccggacacccatttctccacatttaaaatgtgtgatcttcagtcactagactatttgattaaaaaaaaaaaaatca 27159778  T
Q  355 atttaattaagagacaaaataaatagtctcagcttttaataagaaaattattaatgatgtaaatttctccttcatgata---tttgattttagtcacatt 451  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||| |||   |||||||||||| |||||    
T  27159777 atttaattaagagacaaaataaatagtctcagcttttaataagaaaattattaatg--gtagatttctccttcatcataatatttgattttagttacatt 27159680  T
Q  452 tattcaccattttctacaatatcacaagttgtaacataactatataaaagcaatcacacctataactgaaaacttgtataatgcaaaaaataaattttag 551  Q
    ||||||| ||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27159679 tattcactattttctactatatcataagttgtaacataactatgtaaaagcaatcacacctataactgaaaacttgtataatgcaaaaaataaattttag 27159580  T
Q  552 ggccatgatttatcataacaacctataaattcctaataatgcagaagaaatttcattagcatgaaaattcacctgtgctatagcttttcctgatgagatt 651  Q
     |||||||||||| |||| ||||| ||||||||||| |||||| ||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||    
T  27159579 tgccatgatttattataagaacctctaaattcctaacaatgca-aagaaatttgattagtatgaaaattcacctgagctatagcttttcctgatgagatt 27159481  T
Q  652 gcaatgtcttttattattggattgtccataacagcaagtgaaccccacggtgctccattagcacccaaaggggaccatgcactcacatgaatccctttct 751  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27159480 gcaatgtcttttattattggattgtccataacagcaagtgaaccccacggtgctccattagcacccaaaggggaccatgcactcacatgaatccctttct 27159381  T
Q  752 ctttgcagaaatttctcagatattctt 778  Q
    |||||||||| ||||||||||||||||    
T  27159380 ctttgcagaactttctcagatattctt 27159354  T

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Target: chr6; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 27160106 - 27159919
Alignment:
Q  19 tgtgatacttgtttaatcctctccaaatcaacctcacttagctcccaatcaaatatttcaagatttattttcattctctccttgttgaagctcttcacaa 118  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||    
T  27160106 tgtgatacttgtttaatcttctccaaatcaacctcacttagctcccaatcaaatagttcaatattttttttcattctctccttgttgaagctcttcacaa 27160007  T
Q  119 ttggagtagcaccttgctctattagccatcttaatgcaacctgaaattgaaaatgtgttagggtgtttatttacctttatggagaaag 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  27160006 ttggagtagcaccttgctctattagccatcttaatgcaacctgaaattgaaaatgtgttagggtgtttatttacctttatggcgaaag 27159919  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 293 - 339
Target Start/End: Original strand, 20846120 - 20846166
Alignment:
Q  293 cacttctctacatttaaaatgtgtgatcttcagtcactagactactt 339  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||    
T  20846120 cacttctctacatttaaaatgtgtgaacttcagtcattagactactt 20846166  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 292 - 337
Target Start/End: Original strand, 18904338 - 18904383
Alignment:
Q  292 ccacttctctacatttaaaatgtgtgatcttcagtcactagactac 337  Q
    ||||||||| ||||||||||||||||| || ||| |||||||||||    
T  18904338 ccacttctccacatttaaaatgtgtgagctccagccactagactac 18904383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 26910958 - 26911015
Alignment:
Q  63 ccaatcaaatatttcaagatttattttcattctctccttgttgaagctcttcacaatt 120  Q
    |||||||||||||||||| |||  |||||| ||||| || |||||||| |||||||||    
T  26910958 ccaatcaaatatttcaaggttttgtttcatcctctctttcttgaagcttttcacaatt 26911015  T

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Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 27441346 - 27441288
Alignment:
Q  61 tcccaatcaaatatttcaagatttattttcattctctccttgttgaagctcttcacaat 119  Q
    |||||||||||||||||||  |||  |||||| ||||||||||||||||||||||||||    
T  27441346 tcccaatcaaatatttcaatgttttgtttcatcctctccttgttgaagctcttcacaat 27441288  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 283 - 337
Target Start/End: Original strand, 28715753 - 28715808
Alignment:
Q  283 cccggaca-tccacttctctacatttaaaatgtgtgatcttcagtcactagactac 337  Q
    |||||||| |||||||||| ||||||||||||||||| |||||| |||||||||||    
T  28715753 cccggacactccacttctccacatttaaaatgtgtgagcttcagccactagactac 28715808  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 136
Target Start/End: Complemental strand, 27429930 - 27429855
Alignment:
Q  61 tcccaatcaaatatttcaagatttattttcattctctccttgttgaagctcttcacaattggagtagcaccttgct 136  Q
    |||||||||||||||||||  |||  |||||| || |||||||||||||| |||||||| ||| | || |||||||    
T  27429930 tcccaatcaaatatttcaatgttttgtttcatcctttccttgttgaagcttttcacaatgggaattgccccttgct 27429855  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 136
Target Start/End: Complemental strand, 27444134 - 27444059
Alignment:
Q  61 tcccaatcaaatatttcaagatttattttcattctctccttgttgaagctcttcacaattggagtagcaccttgct 136  Q
    ||||||||||||||||||   |||| |||||| || |||||||||||||| |||||||| ||| | || |||||||    
T  27444134 tcccaatcaaatatttcagtgtttagtttcatcctttccttgttgaagcttttcacaatgggaattgccccttgct 27444059  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 292 - 341
Target Start/End: Complemental strand, 1817277 - 1817228
Alignment:
Q  292 ccacttctctacatttaaaatgtgtgatcttcagtcactagactacttga 341  Q
    ||||||||| |||||||| ||||| || |||||| |||||||||||||||    
T  1817277 ccacttctccacatttaacatgtgcgagcttcagccactagactacttga 1817228  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 39635372 - 39635420
Alignment:
Q  291 tccacttctctacatttaaaatgtgtgatcttcagtcactagactactt 339  Q
    |||||||||| |||||||||||||||||||| ||| |||||||||||||    
T  39635372 tccacttctccacatttaaaatgtgtgatctccagccactagactactt 39635420  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 291 - 342
Target Start/End: Original strand, 36748958 - 36749009
Alignment:
Q  291 tccacttctctacatttaaaatgtgtgatcttcagtcactagactacttgat 342  Q
    |||||||||| ||||||||||||||||| || |||| |||| ||||||||||    
T  36748958 tccacttctccacatttaaaatgtgtgagctccagttactaaactacttgat 36749009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 302 - 341
Target Start/End: Original strand, 36845191 - 36845230
Alignment:
Q  302 acatttaaaatgtgtgatcttcagtcactagactacttga 341  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  36845191 acatttaaaatgtttgaacttcagtcactagactacttga 36845230  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 260 - 337
Target Start/End: Original strand, 46767382 - 46767461
Alignment:
Q  260 atatgcaggggatgagattcaaaccc-ggacatcc-acttctctacatttaaaatgtgtgatcttcagtcactagactac 337  Q
    ||||||||||| |||| ||||||||| |||||||| ||||||| ||||||||||||||||| || ||| |||||| ||||    
T  46767382 atatgcaggggctgaggttcaaaccccggacatcccacttctccacatttaaaatgtgtgagctccagccactaggctac 46767461  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 292 - 341
Target Start/End: Original strand, 9114084 - 9114133
Alignment:
Q  292 ccacttctctacatttaaaatgtgtgatcttcagtcactagactacttga 341  Q
    ||||||||| ||||||||||||||||| || |||||||||| ||||||||    
T  9114084 ccacttctccacatttaaaatgtgtgagctccagtcactaggctacttga 9114133  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 260 - 331
Target Start/End: Original strand, 9493090 - 9493161
Alignment:
Q  260 atatgcaggggatgagattcaaacccggacatccacttctctacatttaaaatgtgtgatcttcagtcacta 331  Q
    |||||||||||  ||| ||| ||||||||  |||||||||| ||||||||||| ||||| || |||||||||    
T  9493090 atatgcaggggtcgaggttcgaacccggaactccacttctccacatttaaaatatgtgagctccagtcacta 9493161  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 292 - 342
Target Start/End: Complemental strand, 4808042 - 4807992
Alignment:
Q  292 ccacttctctacatttaaaatgtgtgatcttcagtcactagactacttgat 342  Q
    ||||||||||||||||||||||||||| ||  |  ||||||||||||||||    
T  4808042 ccacttctctacatttaaaatgtgtgagctctaaccactagactacttgat 4807992  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 292 - 341
Target Start/End: Complemental strand, 25883985 - 25883936
Alignment:
Q  292 ccacttctctacatttaaaatgtgtgatcttcagtcactagactacttga 341  Q
    ||||||||| ||||||||||||||||| || ||| |||||| ||||||||    
T  25883985 ccacttctccacatttaaaatgtgtgagctccagccactaggctacttga 25883936  T

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Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 292 - 341
Target Start/End: Complemental strand, 39800027 - 39799978
Alignment:
Q  292 ccacttctctacatttaaaatgtgtgatcttcagtcactagactacttga 341  Q
    ||||||||| ||||||||||||||||| |||||| |||||||||| ||||    
T  39800027 ccacttctccacatttaaaatgtgtgagcttcagccactagactatttga 39799978  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 292 - 341
Target Start/End: Complemental strand, 6734736 - 6734687
Alignment:
Q  292 ccacttctctacatttaaaatgtgtgatcttcagtcactagactacttga 341  Q
    ||||||||| ||||||||||||||||| || ||| |||||||||| ||||    
T  6734736 ccacttctccacatttaaaatgtgtgagctccagccactagactaattga 6734687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 292 - 341
Target Start/End: Complemental strand, 33372999 - 33372950
Alignment:
Q  292 ccacttctctacatttaaaatgtgtgatcttcagtcactagactacttga 341  Q
    ||||||||| ||||||||||||||| | || ||| |||||||||||||||    
T  33372999 ccacttctccacatttaaaatgtgtaagctccagccactagactacttga 33372950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 13763834 - 13763878
Alignment:
Q  292 ccacttctctacatttaaaatgtgtgatcttcagtcactagacta 336  Q
    ||||||||||||||||||||||||||| |||||| ||||| ||||    
T  13763834 ccacttctctacatttaaaatgtgtgagcttcagccactaaacta 13763878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 281 - 341
Target Start/End: Original strand, 18101510 - 18101570
Alignment:
Q  281 aacccggacatccacttctctacatttaaaatgtgtgatcttcagtcactagactacttga 341  Q
    |||||||||||||||||||| ||||||||||||||| | ||  || |||||| ||||||||    
T  18101510 aacccggacatccacttctccacatttaaaatgtgttaactctagccactaggctacttga 18101570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 283 - 341
Target Start/End: Complemental strand, 3229721 - 3229662
Alignment:
Q  283 cccggacatcc-acttctctacatttaaaatgtgtgatcttcagtcactagactacttga 341  Q
    ||||||||||| |||||| |||||||||||||||||| |||||| ||||| ||| |||||    
T  3229721 cccggacatcccacttctttacatttaaaatgtgtgagcttcagccactaaactgcttga 3229662  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 302 - 341
Target Start/End: Complemental strand, 37094745 - 37094706
Alignment:
Q  302 acatttaaaatgtgtgatcttcagtcactagactacttga 341  Q
    |||||||||||||||||  |||||||||||||||||||||    
T  37094745 acatttaaaatgtgtgaatttcagtcactagactacttga 37094706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 292 - 341
Target Start/End: Original strand, 12613250 - 12613299
Alignment:
Q  292 ccacttctctacatttaaaatgtgtgatcttcagtcactagactacttga 341  Q
    ||||||||||||||||||||||||||| || || ||||||| || |||||    
T  12613250 ccacttctctacatttaaaatgtgtgagctccaatcactaggctgcttga 12613299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 292 - 337
Target Start/End: Complemental strand, 18512572 - 18512527
Alignment:
Q  292 ccacttctctacatttaaaatgtgtgatcttcagtcactagactac 337  Q
    ||||||||| ||||||||||||||||| || ||| |||||||||||    
T  18512572 ccacttctccacatttaaaatgtgtgagctccagccactagactac 18512527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 292 - 341
Target Start/End: Original strand, 34873159 - 34873208
Alignment:
Q  292 ccacttctctacatttaaaatgtgtgatcttcagtcactagactacttga 341  Q
    ||||||||| ||||||||||||||||| || ||| |||||||||| ||||    
T  34873159 ccacttctccacatttaaaatgtgtgagctccagccactagactatttga 34873208  T

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