View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16566_low_10 (Length: 512)
Name: NF16566_low_10
Description: NF16566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16566_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Complemental strand, 31040972 - 31040475
Alignment:
| Q |
1 |
acttttcactccttttcttctctcactttgtcaattctctgccattgagattctgcagatttcactctctctacataacaacccagctgtagtttgacgt |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31040972 |
acttttcactccttttcttctctcactttgtcaattctctgccattgagattctgcagatttcactctctctacataacaacccagctgtagtttgacgt |
31040873 |
T |
|
| Q |
101 |
attgaacaagacttgtctagtctgtctccttgctttcagcatcagctgattttcgaggtctctactgtcctgagctggaattttaacctctttcaattat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31040872 |
attgaacaagacttgtctagtctgtctccttgctttcagcatcagctgattttcgaggtctctcctgtcctgagctggaattttaacctctttcaattat |
31040773 |
T |
|
| Q |
201 |
ttgattaagtctttgcatcagataccttacacacctctcttacttctccactattttcattacaccttctttcttgctgcaatgtattcattatttctat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31040772 |
ttgattaagtctttgcatcagataccttacacacctctcttacttctccactattttcattacaccttctttcttgctgcaatgtattcattatttctat |
31040673 |
T |
|
| Q |
301 |
gaatactcttatttagtgcttccactgttcccattactctg----ttttgnnnnnnnnnnngtattctatgaatatactacttcaaggatactggtgatt |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
31040672 |
gaatactcttatttagtgcttccactgttcccattactctgttttttttttttttttttttggattctatgaatatactacttcaaggatactggtgatt |
31040573 |
T |
|
| Q |
397 |
tcattttcatatataagtttaggaatctgtaatttcaaatgaatatatgaagagtgaaatgaaactttataattttattttaataaaaatgagttagc |
494 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31040572 |
tcattttcatatataagtttaggaatctgtaatttcaaatgaatatatgaagagtgaaatgaaactttataattttattttaataaaaatgagttagc |
31040475 |
T |
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