View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16566_low_11 (Length: 489)
Name: NF16566_low_11
Description: NF16566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16566_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 11 - 470
Target Start/End: Original strand, 9200732 - 9201212
Alignment:
| Q |
11 |
cacagatcacatttctcccattaaaccattaaaaaacaatatctaacttaattattcattaccataatcatcagcatttctttggtacgatgaatgaaaa |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9200732 |
cacaaatcacatttctcccattaaaccattaaaaaacaatatctaacttaattattcattaccataatcatcagcatttctttggtacgatgaatgaaaa |
9200831 |
T |
|
| Q |
111 |
acaaacattaagttgaagctctcatttgcaattgaaagtactattcaagaaaagcttcaaactatttgataagcaggtagaaagaataagtttgatatta |
210 |
Q |
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| T |
9200832 |
acaaacattaagttgaagctctcatttgcaattgaaagtactattcaagaaaagcttcaaactatttgataagcaggtagaaagaataagtttgatatta |
9200931 |
T |
|
| Q |
211 |
aactaaaactatgctactcaaaatgataaaagcaaaatcaaggaccataaacaaagcaaaat---------------------aaagtcgatagatagaa |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
9200932 |
aactaaaactatgctactcaaaatgataaaagcaaaatcaaggaccataaacaaagcaaaataaaaaaacaggcgtaccaaaaaaagtcgatagatagaa |
9201031 |
T |
|
| Q |
290 |
tcaaggttgagatgacaaagtggagaccggaaatgatgattcggcgtgacgcaataaaactaagcaagcgaatgatccaatggggtgacatgcatgagga |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9201032 |
tcaaggttgagatgacaaagtggagaccggaaatgatgattcggcgtgacgcaataaaactaagcaagcgaatgatccaatggggtgacatgcatgagga |
9201131 |
T |
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| Q |
390 |
ttttgggaagatgaacgaagcgtgaaaggacgttgagaaggacgaacaatcgacgatgggtgttacgtttgacggttgcag |
470 |
Q |
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| T |
9201132 |
ttttgggaagatgaacgaagcgtgaaaggacgttgagaaggacgaacaatcgacgatgggtgttacgtttgacggttgcag |
9201212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 389 - 451
Target Start/End: Complemental strand, 23103550 - 23103488
Alignment:
| Q |
389 |
attttgggaagatgaacgaagcgtgaaaggacgttgagaaggacgaacaatcgacgatgggtg |
451 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
23103550 |
attttgggaagatgaacgaagcgtgaaaggacgttgagaaggacgaacagtcaacgatgggtg |
23103488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 130 - 236
Target Start/End: Complemental strand, 35607319 - 35607216
Alignment:
| Q |
130 |
tctcatttgcaattgaaagtactattcaagaaaagcttcaaactatttgataagcaggtagaaagaataagtttgatattaaactaaaactatgctactc |
229 |
Q |
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||||||||||||||||||||| | | || ||||| |||||| ||||| || ||| || |||| ||||||||||| ||| || |||||||||||||| |
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| T |
35607319 |
tctcatttgcaattgaaagtaatgtaaaaagaaagcctcaaacaatttggtatgcatgtcgaaa---taagtttgatactaacctcaaactatgctactc |
35607223 |
T |
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| Q |
230 |
aaaatga |
236 |
Q |
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||||||| |
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| T |
35607222 |
aaaatga |
35607216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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