View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16566_low_13 (Length: 482)
Name: NF16566_low_13
Description: NF16566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16566_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 130; Significance: 4e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 306 - 468
Target Start/End: Complemental strand, 18748312 - 18748150
Alignment:
| Q |
306 |
ctagaaccaactcaccgcgtccttgagaattgagaaattacacttactgtgagaagtaaaatatgtcnnnnnnntgttataactttattggtactatggg |
405 |
Q |
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| T |
18748312 |
ctagaagcaactcaccacgtccttgagaattgagaaattacacttactgtgagaagtaaaatatgtcaaaaaaatgttataactttattggtactatgag |
18748213 |
T |
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| Q |
406 |
tatgaggtatcatttattttaatatgatatgtttcgctcaagaatgttctctatatagtattt |
468 |
Q |
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| T |
18748212 |
tatgaggtatcatttattttaatatgatatgtttcgctcaagaatgttctctatatagtattt |
18748150 |
T |
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Target: chr5; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 14 - 193
Target Start/End: Complemental strand, 18748598 - 18748419
Alignment:
| Q |
14 |
gaatcatatcaacaaataaaaattgtagacataaaatacccacaagttacatccaagaagattaaataaatcnnnnnnnnttatatcaaagacttaagat |
113 |
Q |
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| T |
18748598 |
gaatcatatcagcaaataaaaattgtaaacataaaatacccacaagttacatccaagaagattaaataaatcaaaaaaaattatatcaaagactcaagat |
18748499 |
T |
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| Q |
114 |
tgatataccttcaatattgttgaaggattgagtgtcatatttatcacccattttcatattattctcttcaaatcatcacc |
193 |
Q |
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| T |
18748498 |
tgatatacctttaatattgttgagggattgagtgtcatatttatcacccattttcatatgaatctcttcaaatcatcacc |
18748419 |
T |
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