View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16566_low_16 (Length: 461)
Name: NF16566_low_16
Description: NF16566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16566_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 207 - 444
Target Start/End: Complemental strand, 12274059 - 12273822
Alignment:
| Q |
207 |
caatatatatctagttgtgttgcgtgtgtcgaagttatgttggtgtctgataccgacacatgttggatgttcatgacctctctttattaagccgaattat |
306 |
Q |
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| T |
12274059 |
caatatatatctagttgtgtcgcgtgtgtcaaagttatgttggtgtctgataccgacacatgttggatgttcatgacctctctttattaagccgaattat |
12273960 |
T |
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| Q |
307 |
cattgttatacatagcaactaacaagtgaaacttgttaatatcataaaaatcaagcttatcaatacaacaatatcttgaagcatatcataaaaattcaag |
406 |
Q |
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| T |
12273959 |
cattgttatacatagcaactaacaagtgaaacttgttaatatcataaaaatcaagcttatcaatacaacaatatcttgaagcatatcataaaaattcaag |
12273860 |
T |
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| Q |
407 |
caatcatttgacacctaccagctgaagagtcccacttg |
444 |
Q |
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| T |
12273859 |
caatcatttgacacctaccagctgaagagtcccacttg |
12273822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 12274263 - 12274155
Alignment:
| Q |
1 |
gtctctctggtggacaccaacggagaaagaacttggaattctgcgtgcatctgttcgcaaaaatatgcaatatgttagtgttcattcaatattcaaatag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12274263 |
gtctctctggtggacaccaacggagaaagaacttggaattctgcgtgcatctgttcgcaaaaatatgcaatatgttagtgttcattcaatattcaaatag |
12274164 |
T |
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| Q |
101 |
caactttag |
109 |
Q |
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| T |
12274163 |
caattttag |
12274155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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