View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16566_low_20 (Length: 427)
Name: NF16566_low_20
Description: NF16566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16566_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 5 - 371
Target Start/End: Complemental strand, 5972431 - 5972066
Alignment:
| Q |
5 |
ttgggtccaacaaatcttggacgagacttcgatacgatattagaatttgtgtttgggtgtaacacaagtgcacaaaactaacttgtaaggtgatgatttg |
104 |
Q |
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| T |
5972431 |
ttgggtccaacaaatcttggacgagacttcgatacgatattagaatttgtgtttgagtgtaacacaagtgcacaaaactaacttgtaagatgatgatt-g |
5972333 |
T |
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| Q |
105 |
cctccatttagaaacatttgtttaggttatctatcatctaatgtgagactcttaacgtaacaagtttttgattcaacaattattagacaaagtgaaattt |
204 |
Q |
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| T |
5972332 |
cctccatttataaacacttgtttagattatctctcatctaatgtgagactcttaacgtaacaagtctttgattcaacaattattagacaaagtgaaattt |
5972233 |
T |
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| Q |
205 |
tagtttttagttggttgaaaacaaaacatatgcatttaggttttaatttacatattgatggcttaaccttattttttgtttgagttttgtcacatgcttt |
304 |
Q |
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| T |
5972232 |
tagtttttagttggttgaaaacaaaacatatgcatttagggtttaatttacatattgatggcttaaccttatttcttgtttgagttttgtcacatgcttt |
5972133 |
T |
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| Q |
305 |
gtgttatctcgattcatgtactatgtttgtagtagttacttttcaatcatctccttgcacagcttat |
371 |
Q |
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| T |
5972132 |
gtgttatctcgattcatgtgctatgtttgtagtagttacttttcaatcatctccttgcacagcttat |
5972066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 382 - 411
Target Start/End: Complemental strand, 5972052 - 5972023
Alignment:
| Q |
382 |
aagcttccttacatagcttatgttggttat |
411 |
Q |
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| T |
5972052 |
aagcttccttacatagcttatgttggttat |
5972023 |
T |
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