View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16566_low_21 (Length: 421)
Name: NF16566_low_21
Description: NF16566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16566_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 21 - 221
Target Start/End: Original strand, 1855133 - 1855333
Alignment:
| Q |
21 |
tgtggaggtgtaaaagttccatatccatttggcataggaaattcaacaacacaagatcatacaccatgttacataaattccaaatttatgctcaattgta |
120 |
Q |
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| T |
1855133 |
tgtggaggtgtaaaagttccatatccatttggcataggaaattcaacagcacaagatcatacaccatgttacataaattccaaatttatgctcacttgta |
1855232 |
T |
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| Q |
121 |
cagacaattccaaattaatttatggtaagaatatacaagtcctagacataaatccccaaggtcaaatggaaatgagatttttcgtctcacgtctctgtac |
220 |
Q |
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| T |
1855233 |
cagacaattccaaattaatttatggtaagaatatacaagtcctagacataaatccccaaggtcaaatggaaatgagatttttcgtctcacatctctgtac |
1855332 |
T |
|
| Q |
221 |
g |
221 |
Q |
| |
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| |
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| T |
1855333 |
g |
1855333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 256 - 406
Target Start/End: Original strand, 1855362 - 1855512
Alignment:
| Q |
256 |
ccgaaaaagcaaataaaccttctctcagagtttcttctctcgcaatttcaagcacagacaacaaattcataacagttggttgtgacagttacggatatct |
355 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1855362 |
ccgaaaaagcaaataaaccttctctcagagtttcttccctcgcaatttcaagcacagacaacaaattcataacagttggttgtgacagtttcggatatct |
1855461 |
T |
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| Q |
356 |
caacagtaatttcaagggtgccacttattctacaggatgcttaacatgatg |
406 |
Q |
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| T |
1855462 |
caacagtaatttcaagggtgccacttattctacaggatgcttaacaagatg |
1855512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 262 - 406
Target Start/End: Complemental strand, 1817823 - 1817679
Alignment:
| Q |
262 |
aagcaaataaaccttctctcagagtttcttctctcgcaatttcaagcacagacaacaaattcataacagttggttgtgacagttacggatatctcaacag |
361 |
Q |
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| T |
1817823 |
aagcaaatagagcttatctcatagtttctcctcacacaatttcaagtacggaaaacaaattcataaccgttggttgcgacagttacggatatctcaacag |
1817724 |
T |
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| Q |
362 |
taatttcaagggtgccacttattctacaggatgcttaacatgatg |
406 |
Q |
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|||||||| |||| ||||||||| ||||| ||||||||| |||| |
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| T |
1817723 |
taatttcacaggtggcacttattcaacagggtgcttaacaagatg |
1817679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 1844992 - 1844913
Alignment:
| Q |
15 |
tatacttgtggaggtgtaaaagttccatatccatttggcataggaaattcaacaacacaagatcatacaccatgttacat |
94 |
Q |
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| T |
1844992 |
tatacttgtggagatataaacattccatatccatttggcataggaaattcaacaacacaagatcatacaccattttacat |
1844913 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 37 - 210
Target Start/End: Complemental strand, 1818039 - 1817866
Alignment:
| Q |
37 |
ttccatatccatttggcataggaaattcaacaacacaagatcatacaccatgttacataaattccaaatttatgctcaattgtacagacaattccaaatt |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||| |||||| |||| ||| | |||| || ||||| |
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| T |
1818039 |
ttccatatccatttggcataggaaattcaacagcacaacatcatacaccatgttacatggattcaaaatttgaactcacctgtgtaaacaactcaaaatt |
1817940 |
T |
|
| Q |
137 |
aatttatggtaagaatatacaagtcctagacataaatccccaaggtcaaatggaaatgagatttttcgtctcac |
210 |
Q |
| |
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|||| || | ||| ||||||| ||||||||||||||||||||| ||||||||| ||||| ||||||| |
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| T |
1817939 |
aattcggcctaggggtatcgaagtcctggacataaatccccaaggtcaagtggaaatgaaattttcagtctcac |
1817866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 303 - 363
Target Start/End: Complemental strand, 9220619 - 9220559
Alignment:
| Q |
303 |
tcaagcacagacaacaaattcataacagttggttgtgacagttacggatatctcaacagta |
363 |
Q |
| |
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|||||||| || ||||| |||||||| |||||||||||||||||||| ||||||||||||| |
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|
| T |
9220619 |
tcaagcactgaaaacaagttcataacggttggttgtgacagttacggttatctcaacagta |
9220559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 315 - 362
Target Start/End: Complemental strand, 9158157 - 9158110
Alignment:
| Q |
315 |
aacaaattcataacagttggttgtgacagttacggatatctcaacagt |
362 |
Q |
| |
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||||| ||| |||| |||||||||||||||||||| |||||||||||| |
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| T |
9158157 |
aacaagttcgtaacggttggttgtgacagttacggttatctcaacagt |
9158110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 278 - 401
Target Start/End: Original strand, 37566852 - 37566975
Alignment:
| Q |
278 |
tctcagagtttcttctctcgcaatttcaagcacagacaacaaattcataacagttggttgtgacagttacggatatctcaacagtaatttcaagggtgcc |
377 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||| || |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
37566852 |
tctcagagttccttctctcacaatttcaagcacggaaaacaaattcataaccgttggttgcgacagttacggatatctcaacagtaatttcaagggtgcc |
37566951 |
T |
|
| Q |
378 |
acttattctacaggatgcttaaca |
401 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
37566952 |
acttattctacaggatgcttaaca |
37566975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 105 - 206
Target Start/End: Original strand, 37566744 - 37566845
Alignment:
| Q |
105 |
tttatgctcaattgtacagacaattccaaattaatttatggtaagaatatacaagtcctagacataaatccccaaggtcaaatggaaatgagatttttcg |
204 |
Q |
| |
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|||| ||||| ||||||| |||| ||||||||||| |||||||||| |||||||||||||||||||||| || |||||||||||||||| |||||||| |
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| T |
37566744 |
tttaagctcacttgtacaaacaactccaaattaatccgtggtaagaatctacaagtcctagacataaatccgcacggtcaaatggaaatgaaatttttcg |
37566843 |
T |
|
| Q |
205 |
tc |
206 |
Q |
| |
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|| |
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|
| T |
37566844 |
tc |
37566845 |
T |
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