View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16566_low_22 (Length: 410)
Name: NF16566_low_22
Description: NF16566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16566_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 24 - 391
Target Start/End: Complemental strand, 32212837 - 32212473
Alignment:
| Q |
24 |
ttataacttgacttatattnnnnnnntaactttattttatcttttattataaaaataggtcatagataatcattatgctatgagcactaaataaaattgg |
123 |
Q |
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| T |
32212837 |
ttataacttgacttatattaaaaaaataactttattttatcttttattataaaaataggtcatacataatcattatgctatgagcactaaataaaattgg |
32212738 |
T |
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| Q |
124 |
tgcaggaggttcacttcatcttttgctcccacatatatcatgtcatataaacataaatgtacttggcaccagaaagaagcaattacagttaatgactgca |
223 |
Q |
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| T |
32212737 |
tgcaggaggttcacttcattttttgctcctacatatatcatgtcatataaacataattgtacttg-caccaaaaagaagcagttacagttaatgactgca |
32212639 |
T |
|
| Q |
224 |
attagaaatcatggaacgtgagcatcaaattgaggaagctgctttagagaaacaacctaagtccaagtaaagtaatccaaaacacaaacaatcttgagac |
323 |
Q |
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||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
32212638 |
atttgaaatcatggaactagagcatcaaattgaggaagctgctttagagcaacaacctaagtccaagtaaagtaatcaaaaacaccaacaatcttgagac |
32212539 |
T |
|
| Q |
324 |
cagccatgcctccaagtaaagtaattaaagagtccccacaaaatatttggtttgctttctagcagttt |
391 |
Q |
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| T |
32212538 |
cagccatgcctccaagtaaagtaattaaagagtccccac--aatatttggtttgctttctagcagttt |
32212473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 304 - 395
Target Start/End: Complemental strand, 32207447 - 32207356
Alignment:
| Q |
304 |
aacacaaacaatcttgagaccagccatgcctccaagtaaagtaattaaagagtccccacaaaatatttggtttgctttctagcagtttaggt |
395 |
Q |
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| T |
32207447 |
aacaccaacaatcttgagaccggccatgcctccaagtaaagtaattaaagagtccccaaaaaatcttttgtttgctctctggcagttcaggt |
32207356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 50 - 81
Target Start/End: Complemental strand, 30770864 - 30770833
Alignment:
| Q |
50 |
taactttattttatcttttattataaaaatag |
81 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
30770864 |
taactttattttatcttttattataaaaatag |
30770833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 81
Target Start/End: Original strand, 31315544 - 31315573
Alignment:
| Q |
52 |
actttattttatcttttattataaaaatag |
81 |
Q |
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| T |
31315544 |
actttattttatcttttattataaaaatag |
31315573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 40356850 - 40356810
Alignment:
| Q |
52 |
actttattttatcttttattataaaaataggtcatagataa |
92 |
Q |
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||||||||||||||||||||||| |||||| | |||||||| |
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| T |
40356850 |
actttattttatcttttattatataaatagcttatagataa |
40356810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 38829726 - 38829766
Alignment:
| Q |
52 |
actttattttatcttttattataaaaataggtcatagataa |
92 |
Q |
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|||| ||||||||||||||||||||||||||| ||| |||| |
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| T |
38829726 |
acttaattttatcttttattataaaaataggttatatataa |
38829766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 80
Target Start/End: Complemental strand, 48397625 - 48397597
Alignment:
| Q |
52 |
actttattttatcttttattataaaaata |
80 |
Q |
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| T |
48397625 |
actttattttatcttttattataaaaata |
48397597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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