View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16566_low_23 (Length: 409)
Name: NF16566_low_23
Description: NF16566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16566_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 18 - 399
Target Start/End: Original strand, 19074460 - 19074837
Alignment:
| Q |
18 |
atccatgtcgatcatatctcttttcttttgaacaagtccctcattgctttatgagaggtactcattcaagggcattttgtcaatcaactctcttacttct |
117 |
Q |
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| T |
19074460 |
atccatgtcgatcatatctcttttcttttgaacaagtccctcattgctttatgagaggtactcattcaagggcattttgtcaatcaactctcttacttct |
19074559 |
T |
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| Q |
118 |
ctagccattttgatcttcatggtacctcatgcggatgcatctagaagcatgcatgcatcagctttcaagccggtggtgaatgttttcatggtaacctttt |
217 |
Q |
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| T |
19074560 |
ctagccattttgatcttcatggtacctcatgcggatgcatctagaagcatgcatgcatcagctttcaagccggtggtgaatgttttcatcgtaacctttt |
19074659 |
T |
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| Q |
218 |
tgaaagttagtttgaacctttctcaaggatcataaaatgtttttcatcttgctatttgaaaccagaaatcccttgcttcctctctaagtaattttgtgtc |
317 |
Q |
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| T |
19074660 |
tgaaagttagtttgaacctttctcaaggatcata----gtctttcatcttgctatttgaaaccagaaatctcttgcttcctctctaaataattttgtgtc |
19074755 |
T |
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| Q |
318 |
ggaacgaaacaatctaggaatttcctattcagttgatcccaaatagctatggtgtcacttagaagtgcattcatccagtatt |
399 |
Q |
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| T |
19074756 |
ggaacgaaacaatctaggaatttcctattcagttgatcccaaatagctatgttgtcacttagaagtgcatttatccagtatt |
19074837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 1003535 - 1003487
Alignment:
| Q |
125 |
ttttgatcttcatggtacctcatgcggatgcatctagaagcatgcatgc |
173 |
Q |
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| T |
1003535 |
ttttgttcttcatggtacctcctactgatgcatctaaaagcatgcatgc |
1003487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 323 - 390
Target Start/End: Complemental strand, 27583247 - 27583180
Alignment:
| Q |
323 |
gaaacaatctaggaatttcctattcagttgatcccaaatagctatggtgtcacttagaagtgcattca |
390 |
Q |
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| T |
27583247 |
gaaacaatcaaggaattgcctctttagttcatcccaagtaacgatggtgtcacttggaagtgcattca |
27583180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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