View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16566_low_25 (Length: 394)

Name: NF16566_low_25
Description: NF16566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16566_low_25
NF16566_low_25
[»] chr4 (3 HSPs)
chr4 (12-168)||(50110717-50110873)
chr4 (220-378)||(50110874-50111033)
chr4 (177-254)||(38581053-38581130)
[»] chr3 (3 HSPs)
chr3 (179-254)||(4181560-4181635)
chr3 (288-378)||(4086662-4086752)
chr3 (178-254)||(4098412-4098488)
[»] chr7 (1 HSPs)
chr7 (177-254)||(6883873-6883950)


Alignment Details
Target: chr4 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 12 - 168
Target Start/End: Original strand, 50110717 - 50110873
Alignment:
Q  12 caaagggtgaatcttgatgtctatactagctcatgtagtgacaaatctctacatttcttctggatctggaccgctctccctcctttcaacttcgacgact 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  50110717 caaagggtgaatcttgatgtctatactagctcatgtagtgacaaatctctacatttcttctggatctggaccgctctccctcctttcaacttcaacgact 50110816  T
Q  112 agagtgattcctgtaaaatcaaacaaatagtaaatcactatgtaagcatttataaaa 168  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  50110817 agagtgattcctgtaaaatcaaacaaatggtaaatcactatgtaagcatttataaaa 50110873  T

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Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 220 - 378
Target Start/End: Original strand, 50110874 - 50111033
Alignment:
Q  220 aaatgccacaaagcagttatgtaaacatgagcaaccnnnnnnnnnnnn-gcaagaaagatgacaaaggtgtgtttgagtgttggcagctatggagaacag 318  Q
    ||||||||||| ||||||||||||||||||||||||             |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  50110874 aaatgccacaaggcagttatgtaaacatgagcaaccaaaaaaaaaaaaagcaagaaagatgacaaaggtgtgtttgagtgttggcagctatggaggacag 50110973  T
Q  319 tgatagatgatgatacacaaaatctgacaattcatatgtataacatgtgaataagaattt 378  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  50110974 tgatagatgatgatacacaaaatctgacaattcgtatgtataacatgtgactaagaattt 50111033  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 177 - 254
Target Start/End: Complemental strand, 38581130 - 38581053
Alignment:
Q  177 agcaaaaccataaaaatgttcaagcatagaaacaaccctagctaaatgccacaaagcagttatgtaaacatgagcaac 254  Q
    |||||||||||||| | ||||||||| ||| ||||| ||||| |||||||||||||||||||| ||||||||| ||||    
T  38581130 agcaaaaccataaagaggttcaagcacagacacaacactagccaaatgccacaaagcagttatataaacatgaacaac 38581053  T

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Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 179 - 254
Target Start/End: Original strand, 4181560 - 4181635
Alignment:
Q  179 caaaaccataaaaatgttcaagcatagaaacaaccctagctaaatgccacaaagcagttatgtaaacatgagcaac 254  Q
    |||||||||||| ||||| ||||| ||||||||| ||||| |||||||||||| ||||||||||||||||||||||    
T  4181560 caaaaccataaacatgttgaagcacagaaacaacactagccaaatgccacaaatcagttatgtaaacatgagcaac 4181635  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 288 - 378
Target Start/End: Complemental strand, 4086752 - 4086662
Alignment:
Q  288 gtgtttgagtgttggcagctatggagaacagtgatagatgatgatacacaaaatctgacaattcatatgtataacatgtgaataagaattt 378  Q
    |||||| | ||||||||||||||||| ||| ||||    || |||||| ||||||||||||| ||||| ||||||||||||||||||||||    
T  4086752 gtgttttattgttggcagctatggaggacaatgatgttagacgatacataaaatctgacaatccatatttataacatgtgaataagaattt 4086662  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 178 - 254
Target Start/End: Complemental strand, 4098488 - 4098412
Alignment:
Q  178 gcaaaaccataaaaatgttcaagcatagaaacaaccctagctaaatgccacaaagcagttatgtaaacatgagcaac 254  Q
    ||||||||||| | |||||| |||||||||||||  ||||| |||||||||  || |||||||||||||||||||||    
T  4098488 gcaaaaccatacacatgttctagcatagaaacaatactagccaaatgccacggagaagttatgtaaacatgagcaac 4098412  T

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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 177 - 254
Target Start/End: Complemental strand, 6883950 - 6883873
Alignment:
Q  177 agcaaaaccataaaaatgttcaagcatagaaacaaccctagctaaatgccacaaagcagttatgtaaacatgagcaac 254  Q
    |||||||||||||| | ||||||||| ||| ||||| ||||| |||||||||||||||||||| ||||||||| ||||    
T  6883950 agcaaaaccataaagaggttcaagcacagacacaacactagccaaatgccacaaagcagttatataaacatgaacaac 6883873  T

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