View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16566_low_26 (Length: 390)

Name: NF16566_low_26
Description: NF16566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16566_low_26
NF16566_low_26
[»] chr5 (17 HSPs)
chr5 (1-154)||(3521391-3521544)
chr5 (154-228)||(3521574-3521648)
chr5 (333-390)||(20502141-20502198)
chr5 (333-390)||(29451947-29452004)
chr5 (333-390)||(32455176-32455233)
chr5 (333-390)||(38978796-38978853)
chr5 (333-390)||(7537075-7537132)
chr5 (333-390)||(27600812-27600869)
chr5 (333-390)||(33247329-33247386)
chr5 (333-384)||(5355605-5355656)
chr5 (333-384)||(24173463-24173514)
chr5 (333-384)||(35204977-35205028)
chr5 (333-384)||(35212131-35212182)
chr5 (333-375)||(19211334-19211376)
chr5 (333-390)||(29002779-29002836)
chr5 (333-390)||(29874354-29874411)
chr5 (333-390)||(9630272-9630329)
[»] chr4 (22 HSPs)
chr4 (333-390)||(54864118-54864175)
chr4 (333-390)||(25874754-25874811)
chr4 (333-390)||(43141803-43141860)
chr4 (335-390)||(8347529-8347584)
chr4 (333-384)||(33615833-33615884)
chr4 (333-390)||(33622917-33622974)
chr4 (333-390)||(37895292-37895349)
chr4 (333-384)||(1205136-1205187)
chr4 (333-390)||(35877368-35877425)
chr4 (333-390)||(35929064-35929121)
chr4 (333-390)||(36196402-36196459)
chr4 (333-390)||(50511282-50511339)
chr4 (333-384)||(31853121-31853172)
chr4 (333-384)||(40592755-40592806)
chr4 (333-384)||(52966438-52966489)
chr4 (333-383)||(50511471-50511521)
chr4 (337-384)||(1140923-1140970)
chr4 (333-384)||(28460800-28460851)
chr4 (333-380)||(43556738-43556785)
chr4 (333-384)||(52136742-52136793)
chr4 (344-384)||(38208314-38208354)
chr4 (333-390)||(52278002-52278061)
[»] chr8 (11 HSPs)
chr8 (335-390)||(34604837-34604892)
chr8 (333-390)||(13831912-13831969)
chr8 (333-390)||(29690490-29690547)
chr8 (333-390)||(35583937-35583994)
chr8 (333-390)||(44579930-44579987)
chr8 (333-390)||(45372759-45372816)
chr8 (333-390)||(7548534-7548591)
chr8 (333-384)||(9420630-9420681)
chr8 (333-384)||(34745311-34745362)
chr8 (333-384)||(40645753-40645804)
chr8 (333-384)||(43292622-43292673)
[»] chr7 (16 HSPs)
chr7 (333-390)||(41487845-41487902)
chr7 (333-390)||(45123299-45123356)
chr7 (333-384)||(7456462-7456513)
chr7 (333-384)||(18064776-18064827)
chr7 (333-384)||(22618217-22618268)
chr7 (333-384)||(41395705-41395756)
chr7 (333-384)||(47484064-47484115)
chr7 (333-384)||(47280216-47280267)
chr7 (333-375)||(12806962-12807004)
chr7 (340-390)||(27320355-27320405)
chr7 (333-381)||(37006502-37006550)
chr7 (333-384)||(39413882-39413933)
chr7 (337-384)||(40234809-40234856)
chr7 (333-384)||(45025648-45025699)
chr7 (333-384)||(47612344-47612395)
chr7 (333-375)||(14543322-14543364)
[»] chr6 (6 HSPs)
chr6 (333-390)||(12217528-12217585)
chr6 (333-390)||(10145252-10145309)
chr6 (333-390)||(30438797-30438854)
chr6 (333-384)||(8265026-8265077)
chr6 (333-375)||(12605662-12605704)
chr6 (333-390)||(28605607-28605664)
[»] chr3 (15 HSPs)
chr3 (333-390)||(27302116-27302173)
chr3 (333-390)||(45113771-45113828)
chr3 (333-390)||(16123810-16123867)
chr3 (333-390)||(53284370-53284427)
chr3 (333-384)||(50100237-50100288)
chr3 (333-384)||(53703784-53703835)
chr3 (333-390)||(43901635-43901692)
chr3 (333-384)||(8769188-8769239)
chr3 (333-384)||(31376218-31376269)
chr3 (333-384)||(39616954-39617005)
chr3 (333-375)||(48346502-48346544)
chr3 (333-390)||(21944343-21944400)
chr3 (337-384)||(2544516-2544564)
chr3 (333-381)||(8764286-8764334)
chr3 (333-369)||(46220420-46220456)
[»] chr2 (9 HSPs)
chr2 (333-390)||(23464533-23464590)
chr2 (333-390)||(28143782-28143839)
chr2 (335-384)||(40534556-40534605)
chr2 (333-384)||(15239735-15239786)
chr2 (333-384)||(36103436-36103487)
chr2 (333-390)||(45076396-45076453)
chr2 (333-384)||(3365318-3365369)
chr2 (333-384)||(41464768-41464819)
chr2 (333-367)||(27306765-27306799)
[»] chr1 (12 HSPs)
chr1 (333-390)||(44224323-44224380)
chr1 (333-390)||(45977131-45977188)
chr1 (333-381)||(13770763-13770811)
chr1 (333-381)||(15699518-15699566)
chr1 (333-384)||(27687884-27687935)
chr1 (333-384)||(29438192-29438243)
chr1 (333-390)||(52279271-52279328)
chr1 (333-384)||(19998465-19998516)
chr1 (333-384)||(51590484-51590535)
chr1 (333-384)||(13321768-13321819)
chr1 (333-386)||(52030909-52030962)
chr1 (333-381)||(31050304-31050352)
[»] scaffold0200 (1 HSPs)
scaffold0200 (333-390)||(25651-25708)
[»] scaffold0110 (1 HSPs)
scaffold0110 (333-384)||(40234-40285)
[»] scaffold0059 (1 HSPs)
scaffold0059 (333-384)||(26629-26680)
[»] scaffold0015 (1 HSPs)
scaffold0015 (333-377)||(17439-17483)


Alignment Details
Target: chr5 (Bit Score: 150; Significance: 3e-79; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 3521391 - 3521544
Alignment:
Q  1 tattattgtaaggttgataataatatttttctggttttgagggtaatatacctatgccacccatgttcaatttcagaattcaattgacggtgttcgttct 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3521391 tattattgtaaggttgataatgatatttttctggttttgagggtaatatacctatgccacccatgttcaatttcagaattcaattgacggtgttcgttct 3521490  T
Q  101 tgtttgttgatttcgagggttttgacttatgttgactatctatctatgaccacc 154  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3521491 tgtttgttgatttcgagggttttgacttatgttgactatctatctatgaccacc 3521544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 154 - 228
Target Start/End: Original strand, 3521574 - 3521648
Alignment:
Q  154 cattccaagaacaaggaaggattgtttgtgtttacatgcaagggttttaaatagttgcgacagtacggcggcctg 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3521574 cattccaagaacaaggaaggattgtttgtgtttacatgcaagggttttaaatagttgcgacagtacggcggcctg 3521648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 333 - 390
Target Start/End: Original strand, 20502141 - 20502198
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaaacaaaa 390  Q
    |||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||    
T  20502141 attaatgtatcttattgtaaatatagactagatacatcacttacacaatgaaccaaaa 20502198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 333 - 390
Target Start/End: Original strand, 29451947 - 29452004
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaaacaaaa 390  Q
    ||||||||||||||||||||||||| || |||||||||||||| |||||||| |||||    
T  29451947 attaatgtatcttattgtaaatatatactagatacatcacttacacaatgaaccaaaa 29452004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 333 - 390
Target Start/End: Complemental strand, 32455233 - 32455176
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaaacaaaa 390  Q
    |||||||||||||||||||||||||||| |||||||||||||  |||||||| |||||    
T  32455233 attaatgtatcttattgtaaatatagactagatacatcacttccacaatgaatcaaaa 32455176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 333 - 390
Target Start/End: Original strand, 38978796 - 38978853
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaaacaaaa 390  Q
    |||||| ||||||||||||||||||||| |||||||||||||| |||||||| |||||    
T  38978796 attaatatatcttattgtaaatatagactagatacatcacttacacaatgaaccaaaa 38978853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 333 - 390
Target Start/End: Original strand, 7537075 - 7537132
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaaacaaaa 390  Q
    ||||||||||||||| ||||||||| || |||||||||||||| |||||||| |||||    
T  7537075 attaatgtatcttatcgtaaatatatactagatacatcacttacacaatgaaccaaaa 7537132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 333 - 390
Target Start/End: Original strand, 27600812 - 27600869
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaaacaaaa 390  Q
    |||||||||||||||||||||||||||  ||||| |||||||| |||||||| |||||    
T  27600812 attaatgtatcttattgtaaatatagattagataaatcacttacacaatgaatcaaaa 27600869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 333 - 390
Target Start/End: Complemental strand, 33247386 - 33247329
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaaacaaaa 390  Q
    |||||| ||||||||||||||||||||| ||||| |||||||||| |||||| |||||    
T  33247386 attaatatatcttattgtaaatatagactagatatatcacttatagaatgaaccaaaa 33247329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 333 - 384
Target Start/End: Original strand, 5355605 - 5355656
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaa 384  Q
    ||||||||||||||||||||||||| || | |||||||||||| ||||||||    
T  5355605 attaatgtatcttattgtaaatataaactaaatacatcacttacacaatgaa 5355656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 333 - 384
Target Start/End: Complemental strand, 24173514 - 24173463
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaa 384  Q
    ||||||||||||||||| |||||||||  |||||||||||||| ||||||||    
T  24173514 attaatgtatcttattgaaaatatagattagatacatcacttacacaatgaa 24173463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 333 - 384
Target Start/End: Original strand, 35204977 - 35205028
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaa 384  Q
    |||||||||||||||||||||||||| | ||||||||| |||| ||||||||    
T  35204977 attaatgtatcttattgtaaatatagtctagatacatcccttacacaatgaa 35205028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 333 - 384
Target Start/End: Complemental strand, 35212182 - 35212131
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaa 384  Q
    |||||||||||||||||||||||||| | ||||||||| |||| ||||||||    
T  35212182 attaatgtatcttattgtaaatatagtctagatacatcccttacacaatgaa 35212131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 333 - 375
Target Start/End: Original strand, 19211334 - 19211376
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcactta 375  Q
    ||||||||||||| |||||||||||||| ||||||||||||||    
T  19211334 attaatgtatcttgttgtaaatatagactagatacatcactta 19211376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 333 - 390
Target Start/End: Complemental strand, 29002836 - 29002779
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaaacaaaa 390  Q
    |||||| |||||||| | |||||||||| |||||||||||||| |||||||| |||||    
T  29002836 attaatatatcttatcgaaaatatagactagatacatcacttacacaatgaaccaaaa 29002779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 333 - 390
Target Start/End: Complemental strand, 29874411 - 29874354
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaaacaaaa 390  Q
    |||||||||| |||||  |||||||||| |||||||||||||| |||||||| |||||    
T  29874411 attaatgtattttattaaaaatatagactagatacatcacttaaacaatgaaccaaaa 29874354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 390
Target Start/End: Complemental strand, 9630329 - 9630272
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaaacaaaa 390  Q
    |||||||||||||||||||||||||  | | ||| |||||||| |||||||| |||||    
T  9630329 attaatgtatcttattgtaaatataatctaaatatatcacttacacaatgaaccaaaa 9630272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 333 - 390
Target Start/End: Original strand, 54864118 - 54864175
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaaacaaaa 390  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  54864118 attaatgtatcttattgtaaatatagactagatacatcacttatacaatgaaccaaaa 54864175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 333 - 390
Target Start/End: Original strand, 25874754 - 25874811
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaaacaaaa 390  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||    
T  25874754 attaatgtattttattgtaaatatagactagatacatcacttatacaatgaaccaaaa 25874811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 333 - 390
Target Start/End: Complemental strand, 43141860 - 43141803
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaaacaaaa 390  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||    
T  43141860 attaatgtatcttattgtaaatatagattagatacatcacttatacaatgaaccaaaa 43141803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 335 - 390
Target Start/End: Complemental strand, 8347584 - 8347529
Alignment:
Q  335 taatgtatcttattgtaaatatagaccagatacatcacttatacaatgaaacaaaa 390  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||||| |||||    
T  8347584 taatgtatcttattgtaaatatagactagatacatcatttatacaatgaaccaaaa 8347529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 333 - 384
Target Start/End: Original strand, 33615833 - 33615884
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaa 384  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  33615833 attaatgtatcttattgtaaatatagactagatacatcacttacacaatgaa 33615884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 333 - 390
Target Start/End: Complemental strand, 33622974 - 33622917
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaaacaaaa 390  Q
    ||||||||||||||||||||||||| || ||||||||||| ||||||||||| |||||    
T  33622974 attaatgtatcttattgtaaatataaactagatacatcacctatacaatgaaccaaaa 33622917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 333 - 390
Target Start/End: Complemental strand, 37895349 - 37895292
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaaacaaaa 390  Q
    |||||||||| ||||||||||| ||||| ||||||||||||||||||||||| |||||    
T  37895349 attaatgtattttattgtaaatgtagactagatacatcacttatacaatgaaccaaaa 37895292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 333 - 384
Target Start/End: Original strand, 1205136 - 1205187
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaa 384  Q
    |||||||||||||||| ||||||||||| |||||||||||||| ||||||||    
T  1205136 attaatgtatcttattataaatatagactagatacatcacttagacaatgaa 1205187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 333 - 390
Target Start/End: Original strand, 35877368 - 35877425
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaaacaaaa 390  Q
    |||||||||||||||||||||||||| | | |||||||||||| |||||||| |||||    
T  35877368 attaatgtatcttattgtaaatatagtctaaatacatcacttacacaatgaaccaaaa 35877425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 333 - 390
Target Start/End: Original strand, 35929064 - 35929121
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaaacaaaa 390  Q
    |||||||||||||||| ||||||||||  |||||||||||||| |||||||| |||||    
T  35929064 attaatgtatcttattataaatatagattagatacatcacttacacaatgaaccaaaa 35929121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 333 - 390
Target Start/End: Complemental strand, 36196459 - 36196402
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaaacaaaa 390  Q
    |||||||||||||||||||||| ||||| | |||||||||||||| |||||| |||||    
T  36196459 attaatgtatcttattgtaaatgtagactatatacatcacttataaaatgaaccaaaa 36196402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 333 - 390
Target Start/End: Complemental strand, 50511339 - 50511282
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaaacaaaa 390  Q
    |||||||||||||||||||||||||| | | |||||||||||| |||||||| |||||    
T  50511339 attaatgtatcttattgtaaatatagtctaaatacatcacttacacaatgaaccaaaa 50511282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 333 - 384
Target Start/End: Original strand, 31853121 - 31853172
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaa 384  Q
    ||||||||||||| || ||||||||||| |||||||||||||| ||||||||    
T  31853121 attaatgtatcttgttataaatatagactagatacatcacttacacaatgaa 31853172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 333 - 384
Target Start/End: Complemental strand, 40592806 - 40592755
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaa 384  Q
    ||||||||||||| || |||||||| || |||||||||||||||||||||||    
T  40592806 attaatgtatcttgttataaatataaactagatacatcacttatacaatgaa 40592755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 333 - 384
Target Start/End: Complemental strand, 52966489 - 52966438
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaa 384  Q
    ||||||| ||||| || ||||||||||| |||||||||||||||||||||||    
T  52966489 attaatgcatcttgttataaatatagactagatacatcacttatacaatgaa 52966438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 333 - 383
Target Start/End: Complemental strand, 50511521 - 50511471
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatga 383  Q
    ||||||||||||||||||||||||| || ||||||||| |||| |||||||    
T  50511521 attaatgtatcttattgtaaatataaactagatacatcccttacacaatga 50511471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 337 - 384
Target Start/End: Original strand, 1140923 - 1140970
Alignment:
Q  337 atgtatcttattgtaaatatagaccagatacatcacttatacaatgaa 384  Q
    |||||| || || |||||||||||||||||||||||||| ||||||||    
T  1140923 atgtattttgttataaatatagaccagatacatcacttacacaatgaa 1140970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 384
Target Start/End: Original strand, 28460800 - 28460851
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaa 384  Q
    |||||| |||||| |||||||||||||| | |||||||||||||| ||||||    
T  28460800 attaatttatcttgttgtaaatatagactaaatacatcacttatataatgaa 28460851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 380
Target Start/End: Complemental strand, 43556785 - 43556738
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaa 380  Q
    |||||||||||||||||||||| ||||| |||||| ||||||| ||||    
T  43556785 attaatgtatcttattgtaaatgtagactagatacgtcacttacacaa 43556738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 384
Target Start/End: Complemental strand, 52136793 - 52136742
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaa 384  Q
    ||||||||||||| || ||||||||||| | |||||||||||| ||||||||    
T  52136793 attaatgtatcttgttataaatatagactaaatacatcacttacacaatgaa 52136742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 384
Target Start/End: Original strand, 38208314 - 38208354
Alignment:
Q  344 ttattgtaaatatagaccagatacatcacttatacaatgaa 384  Q
    |||||| |||||||||| |||||||||||||| ||||||||    
T  38208314 ttattgaaaatatagactagatacatcacttaaacaatgaa 38208354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 390
Target Start/End: Complemental strand, 52278061 - 52278002
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatac--atcacttatacaatgaaacaaaa 390  Q
    |||||| ||||||||||||||||||||| | ||||  |||||||||| |||||| |||||    
T  52278061 attaatatatcttattgtaaatatagactaaatacatatcacttatataatgaatcaaaa 52278002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 335 - 390
Target Start/End: Original strand, 34604837 - 34604892
Alignment:
Q  335 taatgtatcttattgtaaatatagaccagatacatcacttatacaatgaaacaaaa 390  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  34604837 taatgtatcttattgtaaatatagactagatacatcacttatacaatgaaccaaaa 34604892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 333 - 390
Target Start/End: Complemental strand, 13831969 - 13831912
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaaacaaaa 390  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||    
T  13831969 attaatgtatcttattgtaaatatagactatatacatcacttatacaatgaaccaaaa 13831912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 333 - 390
Target Start/End: Original strand, 29690490 - 29690547
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaaacaaaa 390  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||    
T  29690490 attaatgtatcttattataaatatagactagatacatcacttatacaatgaaccaaaa 29690547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 333 - 390
Target Start/End: Original strand, 35583937 - 35583994
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaaacaaaa 390  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||    
T  35583937 attaatgtatcttattgtaaatatagattagatacatcacttatacaatgaaccaaaa 35583994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 333 - 390
Target Start/End: Complemental strand, 44579987 - 44579930
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaaacaaaa 390  Q
    |||||||||||||||||||||||||||| ||||| || ||||||||||| || |||||    
T  44579987 attaatgtatcttattgtaaatatagactagatatattacttatacaataaatcaaaa 44579930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 333 - 390
Target Start/End: Original strand, 45372759 - 45372816
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaaacaaaa 390  Q
    ||||||||||||||||| |||||||||| |||||||||||||| ||| |||| |||||    
T  45372759 attaatgtatcttattgaaaatatagactagatacatcacttacacattgaatcaaaa 45372816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 333 - 390
Target Start/End: Complemental strand, 7548591 - 7548534
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaaacaaaa 390  Q
    ||||||| |||||||||||||||||| | | |||||||||||| |||||||| |||||    
T  7548591 attaatgcatcttattgtaaatatagtctaaatacatcacttacacaatgaaccaaaa 7548534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 384
Target Start/End: Complemental strand, 9420681 - 9420630
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaa 384  Q
    ||||||||| ||  || |||||||||||||||||||| ||||||||||||||    
T  9420681 attaatgtacctcgttataaatatagaccagatacattacttatacaatgaa 9420630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 384
Target Start/End: Original strand, 34745311 - 34745362
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaa 384  Q
    ||||||||||||| || ||||||||||| |||||||||||||| | ||||||    
T  34745311 attaatgtatcttgttataaatatagactagatacatcacttacataatgaa 34745362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 384
Target Start/End: Complemental strand, 40645804 - 40645753
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaa 384  Q
    ||||||||||||| || ||||||||||| |||||||||||||| | ||||||    
T  40645804 attaatgtatcttgttataaatatagactagatacatcacttacataatgaa 40645753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 384
Target Start/End: Original strand, 43292622 - 43292673
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaa 384  Q
    ||||||||||||| || ||||||||||| |||||||||||||| | ||||||    
T  43292622 attaatgtatcttgttataaatatagactagatacatcacttacataatgaa 43292673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 333 - 390
Target Start/End: Original strand, 41487845 - 41487902
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaaacaaaa 390  Q
    |||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||    
T  41487845 attaatgtatcttattgtaaatatagactagatacatcacttacacaatgaaccaaaa 41487902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 333 - 390
Target Start/End: Original strand, 45123299 - 45123356
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaaacaaaa 390  Q
    |||||||||||||||| ||||||||||  ||||||||||||||||||||||| |||||    
T  45123299 attaatgtatcttattataaatatagattagatacatcacttatacaatgaatcaaaa 45123356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 333 - 384
Target Start/End: Complemental strand, 7456513 - 7456462
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaa 384  Q
    ||||||||||||| |||||||||||||| |||||||||| ||||||||||||    
T  7456513 attaatgtatcttgttgtaaatatagactagatacatcatttatacaatgaa 7456462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 333 - 384
Target Start/End: Original strand, 18064776 - 18064827
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaa 384  Q
    ||||||||||||||||| |||||||||| |||||||||||||| ||||||||    
T  18064776 attaatgtatcttattgaaaatatagactagatacatcacttaaacaatgaa 18064827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 333 - 384
Target Start/End: Original strand, 22618217 - 22618268
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaa 384  Q
    ||||||||||||| |||||||||||||| |||||||||||||| ||||||||    
T  22618217 attaatgtatcttgttgtaaatatagactagatacatcacttacacaatgaa 22618268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 333 - 384
Target Start/End: Complemental strand, 41395756 - 41395705
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaa 384  Q
    |||||| ||||||||| ||||||||||| |||||||||||||||||||||||    
T  41395756 attaatatatcttattataaatatagactagatacatcacttatacaatgaa 41395705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 333 - 384
Target Start/End: Complemental strand, 47484115 - 47484064
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaa 384  Q
    |||||||||||||||||||||||||||| ||||||||||||||  |||||||    
T  47484115 attaatgtatcttattgtaaatatagactagatacatcacttacgcaatgaa 47484064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 333 - 384
Target Start/End: Complemental strand, 47280267 - 47280216
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaa 384  Q
    |||||||||||||||||||||||||||| | |||||| | ||||||||||||    
T  47280267 attaatgtatcttattgtaaatatagactaaatacattatttatacaatgaa 47280216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 333 - 375
Target Start/End: Original strand, 12806962 - 12807004
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcactta 375  Q
    |||||||||||||||||||||||||||| | ||||||||||||    
T  12806962 attaatgtatcttattgtaaatatagactacatacatcactta 12807004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 340 - 390
Target Start/End: Original strand, 27320355 - 27320405
Alignment:
Q  340 tatcttattgtaaatatagaccagatacatcacttatacaatgaaacaaaa 390  Q
    ||||||||||||||||||||| ||| |||| |||||||||||||| |||||    
T  27320355 tatcttattgtaaatatagactagaaacattacttatacaatgaaccaaaa 27320405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 333 - 381
Target Start/End: Complemental strand, 37006550 - 37006502
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaat 381  Q
    ||||||||||| ||||||||||||| ||  |||||||||||||||||||    
T  37006550 attaatgtatcatattgtaaatataaactggatacatcacttatacaat 37006502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 384
Target Start/End: Original strand, 39413882 - 39413933
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaa 384  Q
    ||||||||||| | |||||||||| ||  |||||||||||||||||||||||    
T  39413882 attaatgtatcatgttgtaaatattgattagatacatcacttatacaatgaa 39413933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 337 - 384
Target Start/End: Complemental strand, 40234856 - 40234809
Alignment:
Q  337 atgtatcttattgtaaatatagaccagatacatcacttatacaatgaa 384  Q
    ||||||||| |||||||||||||| |||||||||| ||| ||||||||    
T  40234856 atgtatcttgttgtaaatatagactagatacatcagttacacaatgaa 40234809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 384
Target Start/End: Original strand, 45025648 - 45025699
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaa 384  Q
    ||||||||||||| || ||||||||||| |||||||||||||| | ||||||    
T  45025648 attaatgtatcttgttataaatatagactagatacatcacttacataatgaa 45025699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 384
Target Start/End: Original strand, 47612344 - 47612395
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaa 384  Q
    ||||||||||||  || ||||||||||| |||||||| ||||||||||||||    
T  47612344 attaatgtatctcgttataaatatagactagatacattacttatacaatgaa 47612395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 333 - 375
Target Start/End: Original strand, 14543322 - 14543364
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcactta 375  Q
    |||||||||||||  ||||||||||||| ||||||||||||||    
T  14543322 attaatgtatcttgatgtaaatatagactagatacatcactta 14543364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 333 - 390
Target Start/End: Complemental strand, 12217585 - 12217528
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaaacaaaa 390  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| || |||||    
T  12217585 attaatgtatcttattgtaaatatagactagatacatcacttatacaataaaccaaaa 12217528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 333 - 390
Target Start/End: Complemental strand, 10145309 - 10145252
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaaacaaaa 390  Q
    |||||||||||||||||||||||||||| ||||||||||||||||  ||||| |||||    
T  10145309 attaatgtatcttattgtaaatatagactagatacatcacttatatgatgaatcaaaa 10145252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 333 - 390
Target Start/End: Original strand, 30438797 - 30438854
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaaacaaaa 390  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||| || |||||    
T  30438797 attaatgtattttattgtaaatatagactagatacatcacttatacaataaaccaaaa 30438854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 333 - 384
Target Start/End: Original strand, 8265026 - 8265077
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaa 384  Q
    ||||||||||||| || ||||||||||| |||||||||||||| ||||||||    
T  8265026 attaatgtatcttgttataaatatagactagatacatcacttacacaatgaa 8265077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 333 - 375
Target Start/End: Complemental strand, 12605704 - 12605662
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcactta 375  Q
    |||||||||||||||||||||||||||| | ||||||||||||    
T  12605704 attaatgtatcttattgtaaatatagactaaatacatcactta 12605662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 333 - 390
Target Start/End: Complemental strand, 28605664 - 28605607
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaaacaaaa 390  Q
    ||||||||||||||||||||||||||   | |||||||||||| |||||||| |||||    
T  28605664 attaatgtatcttattgtaaatatagtttaaatacatcacttacacaatgaaccaaaa 28605607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 333 - 390
Target Start/End: Complemental strand, 27302173 - 27302116
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaaacaaaa 390  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||    
T  27302173 attaatgtatctaattgtaaatatagactagatacatcacttatacaatgaaccaaaa 27302116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 333 - 390
Target Start/End: Complemental strand, 45113828 - 45113771
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaaacaaaa 390  Q
    |||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||    
T  45113828 attaatgtatcttattgtaaatatagactagatacatcacttacacaatgaaccaaaa 45113771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 333 - 390
Target Start/End: Original strand, 16123810 - 16123867
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaaacaaaa 390  Q
    |||||| ||||||||||||||||||||| |||||||| |||||||||||||| |||||    
T  16123810 attaatatatcttattgtaaatatagactagatacattacttatacaatgaaccaaaa 16123867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 333 - 390
Target Start/End: Original strand, 53284370 - 53284427
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaaacaaaa 390  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||| || |||||    
T  53284370 attaatgtatcttattgtaaatgtagactagatacatcacttatacaataaaccaaaa 53284427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 333 - 384
Target Start/End: Complemental strand, 50100288 - 50100237
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaa 384  Q
    ||||| |||||||||| ||||||||||| |||||||||||||||||||||||    
T  50100288 attaacgtatcttattataaatatagactagatacatcacttatacaatgaa 50100237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 333 - 384
Target Start/End: Original strand, 53703784 - 53703835
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaa 384  Q
    ||||||||||||| || ||||||||||| |||||||||||||| ||||||||    
T  53703784 attaatgtatcttgttataaatatagactagatacatcacttacacaatgaa 53703835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 333 - 390
Target Start/End: Original strand, 43901635 - 43901692
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaaacaaaa 390  Q
    ||||||||||||||||| |||||||||| || ||||||| ||| |||||||| |||||    
T  43901635 attaatgtatcttattgaaaatatagactaggtacatcatttacacaatgaaccaaaa 43901692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 384
Target Start/End: Original strand, 8769188 - 8769239
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaa 384  Q
    ||||||||||||| || ||||||||||  |||||||||||||| ||||||||    
T  8769188 attaatgtatcttgttataaatatagattagatacatcacttacacaatgaa 8769239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 384
Target Start/End: Complemental strand, 31376269 - 31376218
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaa 384  Q
    ||||||||||||| || ||||||||||| |||||||||||||| | ||||||    
T  31376269 attaatgtatcttcttataaatatagactagatacatcacttacataatgaa 31376218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 384
Target Start/End: Complemental strand, 39617005 - 39616954
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaa 384  Q
    ||||||||||||| || ||||||||||| |||||||||||||| | ||||||    
T  39617005 attaatgtatcttgttataaatatagactagatacatcacttacataatgaa 39616954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 333 - 375
Target Start/End: Complemental strand, 48346544 - 48346502
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcactta 375  Q
    ||||||||||||| || ||||||||||| ||||||||||||||    
T  48346544 attaatgtatcttgttataaatatagactagatacatcactta 48346502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 390
Target Start/End: Original strand, 21944343 - 21944400
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaaacaaaa 390  Q
    |||||||||||||| |||| |||||||| ||||||| |||||| |||| ||| |||||    
T  21944343 attaatgtatcttagtgtagatatagactagatacaccacttacacaaggaaccaaaa 21944400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 337 - 384
Target Start/End: Original strand, 2544516 - 2544564
Alignment:
Q  337 atgtatcttattgtaaat-atagaccagatacatcacttatacaatgaa 384  Q
    ||||||||| || ||||| |||||||| |||||||||||||||||||||    
T  2544516 atgtatcttgttataaattatagaccaaatacatcacttatacaatgaa 2544564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 381
Target Start/End: Original strand, 8764286 - 8764334
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaat 381  Q
    ||||||||||||| || ||||||||||  |||||||||||||| |||||    
T  8764286 attaatgtatcttgttataaatatagattagatacatcacttacacaat 8764334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 369
Target Start/End: Original strand, 46220420 - 46220456
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacat 369  Q
    ||||||||||||||||||||||||| || ||||||||    
T  46220420 attaatgtatcttattgtaaatatatactagatacat 46220456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 333 - 390
Target Start/End: Complemental strand, 23464590 - 23464533
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaaacaaaa 390  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||    
T  23464590 attaatgtatcttattgtaaatatagactagatacatctcttatacaatgaaccaaaa 23464533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 333 - 390
Target Start/End: Complemental strand, 28143839 - 28143782
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaaacaaaa 390  Q
    |||||||||||||||| ||||||||||| |||||||||||||| |||||||| |||||    
T  28143839 attaatgtatcttattataaatatagactagatacatcacttacacaatgaaccaaaa 28143782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 335 - 384
Target Start/End: Complemental strand, 40534605 - 40534556
Alignment:
Q  335 taatgtatcttattgtaaatatagaccagatacatcacttatacaatgaa 384  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  40534605 taatgtatcttattgtaaatatagactagatacatcatttatacaatgaa 40534556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 333 - 384
Target Start/End: Complemental strand, 15239786 - 15239735
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaa 384  Q
    |||||| ||||||||||||||||||||| |||||||||||||| ||||||||    
T  15239786 attaatatatcttattgtaaatatagactagatacatcacttacacaatgaa 15239735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 333 - 384
Target Start/End: Complemental strand, 36103487 - 36103436
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaa 384  Q
    |||||||||||||||||||||||||| | |||||||||||||| ||||||||    
T  36103487 attaatgtatcttattgtaaatatagtctagatacatcacttacacaatgaa 36103436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 333 - 390
Target Start/End: Original strand, 45076396 - 45076453
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaaacaaaa 390  Q
    |||||||||| |||||||| |||||||| |||||||||||||| |||||||| |||||    
T  45076396 attaatgtattttattgtacatatagactagatacatcacttacacaatgaaccaaaa 45076453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 384
Target Start/End: Complemental strand, 3365369 - 3365318
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaa 384  Q
    |||||| |||||| || ||||||||||  |||||||||||||||||||||||    
T  3365369 attaatatatcttgttataaatatagattagatacatcacttatacaatgaa 3365318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 384
Target Start/End: Original strand, 41464768 - 41464819
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaa 384  Q
    ||||||||||||  || ||||||||||| |||||||||||||| ||||||||    
T  41464768 attaatgtatctcgttataaatatagactagatacatcacttacacaatgaa 41464819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 333 - 367
Target Start/End: Original strand, 27306765 - 27306799
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatac 367  Q
    |||||||||||||||||||||||||||| ||||||    
T  27306765 attaatgtatcttattgtaaatatagactagatac 27306799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 333 - 390
Target Start/End: Original strand, 44224323 - 44224380
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaaacaaaa 390  Q
    |||||||||||||||||||||||||| | ||||||||||||| ||||||||| |||||    
T  44224323 attaatgtatcttattgtaaatatagtctagatacatcacttgtacaatgaaccaaaa 44224380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 333 - 390
Target Start/End: Complemental strand, 45977188 - 45977131
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaaacaaaa 390  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||| || |||||    
T  45977188 attaatgtatcttattgtaaatatagactagatacatcacctatacaataaaccaaaa 45977131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 333 - 381
Target Start/End: Original strand, 13770763 - 13770811
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaat 381  Q
    |||||||||||||||||||||||||||| |||||||||||||| |||||    
T  13770763 attaatgtatcttattgtaaatatagactagatacatcacttacacaat 13770811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 333 - 381
Target Start/End: Original strand, 15699518 - 15699566
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaat 381  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  15699518 attaatgtatcttgttgtaaatatagactagatacatcacttatacaat 15699566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 333 - 384
Target Start/End: Complemental strand, 27687935 - 27687884
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaa 384  Q
    |||||||||||||||||||||||||||| |||||||||||||| | ||||||    
T  27687935 attaatgtatcttattgtaaatatagactagatacatcacttacataatgaa 27687884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 333 - 384
Target Start/End: Original strand, 29438192 - 29438243
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaa 384  Q
    ||||||||||||||||| |||||||||| |||||||||||||| ||||||||    
T  29438192 attaatgtatcttattgaaaatatagactagatacatcacttacacaatgaa 29438243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 333 - 390
Target Start/End: Complemental strand, 52279328 - 52279271
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaaacaaaa 390  Q
    |||||| |||||||||||||||||||||  ||||||||||||| |||||||| |||||    
T  52279328 attaatatatcttattgtaaatatagacttgatacatcacttacacaatgaaccaaaa 52279271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 333 - 384
Target Start/End: Original strand, 19998465 - 19998516
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaa 384  Q
    |||||| |||||| |||||||||||||| |||||||||||||| ||||||||    
T  19998465 attaatatatcttgttgtaaatatagactagatacatcacttacacaatgaa 19998516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 333 - 384
Target Start/End: Original strand, 51590484 - 51590535
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaa 384  Q
    ||||||||||||| || ||||||||||| |||||||||||||| ||||||||    
T  51590484 attaatgtatcttgttataaatatagactagatacatcacttacacaatgaa 51590535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 384
Target Start/End: Original strand, 13321768 - 13321819
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaa 384  Q
    ||||||||||||| || ||||||||||| |||||||||||||| | ||||||    
T  13321768 attaatgtatcttgttataaatatagactagatacatcacttacataatgaa 13321819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 386
Target Start/End: Complemental strand, 52030962 - 52030909
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaaac 386  Q
    |||||||||||||||| |||||||| |  |||||||||||||| || |||||||    
T  52030962 attaatgtatcttattataaatataaattagatacatcacttacacgatgaaac 52030909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 381
Target Start/End: Original strand, 31050304 - 31050352
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaat 381  Q
    |||||||||| || |||||||||||||| | |||||||||||| |||||    
T  31050304 attaatgtattttgttgtaaatatagactaaatacatcacttacacaat 31050352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 333 - 390
Target Start/End: Complemental strand, 25708 - 25651
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaaacaaaa 390  Q
    |||||||||||||||| ||||||||||| |||||||||||||||| ||| || |||||    
T  25708 attaatgtatcttattataaatatagactagatacatcacttatataataaaccaaaa 25651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 333 - 384
Target Start/End: Complemental strand, 40285 - 40234
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaa 384  Q
    |||||| |||||| |||||||||||||| |||||||||||||| ||||||||    
T  40285 attaatatatcttgttgtaaatatagactagatacatcacttacacaatgaa 40234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 333 - 384
Target Start/End: Complemental strand, 26680 - 26629
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttatacaatgaa 384  Q
    ||||||||||||| |||||||||||||| |||||||||||||| | ||||||    
T  26680 attaatgtatcttgttgtaaatatagactagatacatcacttacataatgaa 26629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 377
Target Start/End: Original strand, 17439 - 17483
Alignment:
Q  333 attaatgtatcttattgtaaatatagaccagatacatcacttata 377  Q
    ||||||||||||| | |||||||||||| ||| ||||||||||||    
T  17439 attaatgtatcttgtagtaaatatagactagacacatcacttata 17483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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