View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16566_low_27 (Length: 372)
Name: NF16566_low_27
Description: NF16566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16566_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 187 - 363
Target Start/End: Original strand, 7930988 - 7931164
Alignment:
| Q |
187 |
ttaaggagtatataatattgctgaataaacaaaagttaccatgtagctctgaatctgccacacttctctgcctctctagcaacattatctttccactatc |
286 |
Q |
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| T |
7930988 |
ttaaggagtatataatattgctgaataaacaaaagttaccatgtagctctgaatctgccacacttctctgtctctctagcaacattatctttccactatc |
7931087 |
T |
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| Q |
287 |
aattggaagagagcaagatctctctaaagatggcacaaaggaacaccaatttcccatctctccagccattgatgatg |
363 |
Q |
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| T |
7931088 |
aattggaagagagcaagatctctctaaagatggcacaaaggaacaccaattttccatctctccagccattgatgatg |
7931164 |
T |
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Target: chr3; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 17 - 193
Target Start/End: Original strand, 7930300 - 7930481
Alignment:
| Q |
17 |
atgtaaaaacccttaagagtatcttttt-acctaatattgataatgtcgttatattattcgtaaataccaactaagggacgataagatcatattgaaata |
115 |
Q |
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|||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
7930300 |
atgtaaaaacccttcagagtatcttttttacctaatattgataatgtcgtcatattatttgtaaataccaactaagggacgataagatcattttgaaata |
7930399 |
T |
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| Q |
116 |
taaatat----aaatattgacaatgtaatagcatctctaatgaagagtcttttacctaataaagacaccaacctattaagga |
193 |
Q |
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| T |
7930400 |
taaatatatataaatattgacaatgtaatagcatctctaatgaagagtcttttacctaataaagacaccaacctattaagga |
7930481 |
T |
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