View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16566_low_28 (Length: 366)
Name: NF16566_low_28
Description: NF16566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16566_low_28 |
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| [»] scaffold0444 (1 HSPs) |
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Alignment Details
Target: scaffold0444 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: scaffold0444
Description:
Target: scaffold0444; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 16 - 348
Target Start/End: Original strand, 6090 - 6414
Alignment:
| Q |
16 |
atggactgtaccaacaaaaatgagggtgaaattccagttcctttggaatgcaagagctggttaataaaatgaagcaccgctcgacttactcatcatttcc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
6090 |
atggactgtaccaacaaaaatgagggtgaaattccagttcctttggaatgcaagagctagttaataaaatgaagcaccgctcgacttactcatcatttcc |
6189 |
T |
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| Q |
116 |
aagttctcaatctgcttcttgagttgatcaggatctttcttcaaaatccccacatccctcaccttctttctttcttttttattctgtaaaccaaaacaac |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
6190 |
aagttctcaatctgcttcttgagttgatcaggatctttcttcaaaatccccacatccctcaccttctttctttcttttttattctgtaaac--------c |
6281 |
T |
|
| Q |
216 |
aaagcaaaaaacataaatcagtgattaagtcactatttagataaatagcttaattaagctagcataagtgcttatcaattatcatgtatgaaaaaaccct |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6282 |
aaagcaaaaaacataaatcagtgattaagtcactatttagataaatagcttaattaagctagcataagtgcttatcaattatcatgtatgaaaaaaccct |
6381 |
T |
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| Q |
316 |
atttgcataattgaaattcaattttgcaaaata |
348 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
6382 |
atttgcataattgaaattcaattttgcaaaata |
6414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 16 - 348
Target Start/End: Original strand, 44441277 - 44441601
Alignment:
| Q |
16 |
atggactgtaccaacaaaaatgagggtgaaattccagttcctttggaatgcaagagctggttaataaaatgaagcaccgctcgacttactcatcatttcc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
44441277 |
atggactgtaccaacaaaaatgagggtgaaattccagttcctttggaatgcaagagctagttaataaaatgaagcaccgctcgacttactcatcatttcc |
44441376 |
T |
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| Q |
116 |
aagttctcaatctgcttcttgagttgatcaggatctttcttcaaaatccccacatccctcaccttctttctttcttttttattctgtaaaccaaaacaac |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
44441377 |
aagttctcaatctgcttcttgagttgatcaggatctttcttcaaaatccccacatccctcaccttctttctttcttttttattctgtaaac--------c |
44441468 |
T |
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| Q |
216 |
aaagcaaaaaacataaatcagtgattaagtcactatttagataaatagcttaattaagctagcataagtgcttatcaattatcatgtatgaaaaaaccct |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44441469 |
aaagcaaaaaacataaatcagtgattaagtcactatttagataaatagcttaattaagctagcataagtgcttatcaattatcatgtatgaaaaaaccct |
44441568 |
T |
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| Q |
316 |
atttgcataattgaaattcaattttgcaaaata |
348 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
44441569 |
atttgcataattgaaattcaattttgcaaaata |
44441601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 16 - 225
Target Start/End: Original strand, 44430857 - 44431064
Alignment:
| Q |
16 |
atggactgtaccaacaaaaatgagggtgaaattccagttcctttggaatgcaagagctggttaataaaatgaagcaccgctcgacttactcatcatttcc |
115 |
Q |
| |
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||||||||||||||||||| | ||||||||||||||||||||| | ||||||| |||| ||||||||||| ||||| | ||||||||||||||||||| |
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| T |
44430857 |
atggactgtaccaacaaaa-taagggtgaaattccagttcctt-gaaatgcaaaagctagttaataaaataaagcatgacgcgacttactcatcatttcc |
44430954 |
T |
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| Q |
116 |
aagttctcaatctgcttcttgagttgatcaggatctttcttcaaaatccccacatccctcaccttctttctttcttttttattctgtaaaccaaaacaac |
215 |
Q |
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||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44430955 |
aagttttcaatctgtttcttgagttgatcaggatctttcttcaaaatccccacatccctcaccttctttctttcttttttattctgtaaaccaaaacaac |
44431054 |
T |
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| Q |
216 |
aaagcaaaaa |
225 |
Q |
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|||||||||| |
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| T |
44431055 |
aaagcaaaaa |
44431064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 44 - 225
Target Start/End: Original strand, 30182953 - 30183133
Alignment:
| Q |
44 |
aaattccagttcctttggaatgcaagagctggttaataaaatgaagcaccgctcgacttactcatcatttccaagttctcaatctgcttcttgagttgat |
143 |
Q |
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||||||||||||||| | ||||||| |||| ||||||||||| ||||| ||||| ||||||||||||||||| |||||||| ||||||||||||| |
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| T |
30182953 |
aaattccagttcctt-gaaatgcaaaagctagttaataaaataaagcatgatgagacttgctcatcatttccaagttttcaatctgtttcttgagttgat |
30183051 |
T |
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| Q |
144 |
caggatctttcttcaaaatccccacatccctcaccttctttctttcttttttattctgtaaaccaaaacaacaaagcaaaaa |
225 |
Q |
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| T |
30183052 |
caggatctttcttcaaaatccccacatccctcaccttctttctttctttttaattctgtaaaccaaaacaacaaagcaaaaa |
30183133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 299 - 348
Target Start/End: Original strand, 44431104 - 44431153
Alignment:
| Q |
299 |
atgtatgaaaaaaccctatttgcataattgaaattcaattttgcaaaata |
348 |
Q |
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||||||||||||| |||| |||||| |||||||||||||||||||||||| |
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| T |
44431104 |
atgtatgaaaaaaacctaattgcatgattgaaattcaattttgcaaaata |
44431153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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