View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16566_low_29 (Length: 366)
Name: NF16566_low_29
Description: NF16566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16566_low_29 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 17 - 366
Target Start/End: Original strand, 35926231 - 35926586
Alignment:
| Q |
17 |
cagatttttctacgccacccctccaatctgattcatccacatgacccctcccttcgaccgtttgacacatcaacccagatttttgttgtcgtgtaacctc |
116 |
Q |
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|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
35926231 |
cagattcttctacgccacccctccgatctgattcatccacatgacccctcccttcgaccgtttgacacatcaacccagatttttgttgtcgtttgacctc |
35926330 |
T |
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| Q |
117 |
tctttgta------acaagaaagtcatgaaaagctaccccctttgatatatttgttgtcactgaattctggnnnnnnnnnaaggtttaaaaacattggat |
210 |
Q |
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| T |
35926331 |
tctttgtagtcacaacaagaaagtcatgaaaagctaccccctttgatatatttgttgtcactgaattctggtttttttttaaggtttaaaaacattggat |
35926430 |
T |
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| Q |
211 |
tttgattatatttgttgaaattgatacaaaagttataaaattgattctagttgttgatgaatttctggggtggatgcttctcaacccaaagatctgtggt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35926431 |
tttgattatatttgttgaaattgatacaaaagttataaaattgattctagttgttgatgaatttctggggtggatgcttctcaacccaaagatctgtggt |
35926530 |
T |
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| Q |
311 |
atacatagatatccttttatacttctccgatttgaaaagatctgaactcttctttc |
366 |
Q |
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| T |
35926531 |
atacatagatatccttttatacttctccgatttgaaaagatctgaactcttctttc |
35926586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 6e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 17 - 296
Target Start/End: Complemental strand, 38664314 - 38664027
Alignment:
| Q |
17 |
cagatttttctacgccacccctccaatctgattcatccacatgacccctcccttcgaccgtttgacacatcaacccagatttttgttgtcgtgtaacctc |
116 |
Q |
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|||||| ||||| ||||||||||| |||||||||||||| |||||||||| | ||||| | ||| ||||||||||| ||| |||||||||||| ||||| |
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| T |
38664314 |
cagattcttctatgccacccctccgatctgattcatccatgtgacccctccatccgaccatgtgagacatcaacccatattgttgttgtcgtgtgacctc |
38664215 |
T |
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| Q |
117 |
tctttgtaa------caagaaagtcatgaaaagctaccccct-ttgatatatttgttgtcactgaattctggnnnnnnnnna-aggtttaaaaacattgg |
208 |
Q |
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|||||||| || |||| |||| ||||| |||||||| |||||||||||| ||| |||||| | | ||||||||||| ||||| |
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| T |
38664214 |
tctttgtagtcgtagcacgaaattcatcaaaagataccccctcttgatatatttgctgtagttgaatttggtattttttttacaggtttaaaaaaattgg |
38664115 |
T |
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| Q |
209 |
attttgattatatttgttgaaattgatacaaaagttataaaattgattctagttgttgatgaatttctggggtggatgcttctcaacc |
296 |
Q |
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| T |
38664114 |
attttgattatatttgttgaaattgatacaaaagttataaaattggttctagttgttgatgaatttttggggtgggtgcttctcaacc |
38664027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 249
Target Start/End: Complemental strand, 17690344 - 17690300
Alignment:
| Q |
204 |
attggattttgattatatttgttgaaattgatacaaaagttataaa |
249 |
Q |
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| T |
17690344 |
attgggttttgattagatttgttgaaattgat-caaaagttataaa |
17690300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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