View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16566_low_3 (Length: 693)
Name: NF16566_low_3
Description: NF16566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16566_low_3 |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 261
Target Start/End: Original strand, 30492546 - 30492790
Alignment:
| Q |
17 |
acaaccttttacatcttttcactgtgttgttatgtgtactatagaagtatacatgtactatgtccataaatgtattactcttgnnnnnnngtattgtaca |
116 |
Q |
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| T |
30492546 |
acaaccttttacatcttttcactgtgttgttatgtgtactatagaagtatatatgtactatgtccataaatgtattactcttgaaaaaaaatattgtaca |
30492645 |
T |
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| Q |
117 |
cactccttacttagccatcctcttcacatgcatttatttttatgcatgaagattttaaaagatacacattacgatgttggtcccctatatatatgttggt |
216 |
Q |
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| T |
30492646 |
cactccttacttagccatcctcttcacatgcatttatttttatgcatgaagattttaaaagatacacatcacgatgttggtcccctatatatatgttggt |
30492745 |
T |
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| Q |
217 |
ccatatattttcacaattttgttgatttggtcccctatttagaaa |
261 |
Q |
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| T |
30492746 |
ccatatattttcacaattttgaggatttggtcccctatttagaaa |
30492790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 332 - 545
Target Start/End: Original strand, 30492861 - 30493076
Alignment:
| Q |
332 |
gtggtatatgatttgttgatgagaaaatatcaattgaaactgtnnnnnnnn--tactactgaaactttatttaaaatatgtcaaatcataatattttaaa |
429 |
Q |
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| T |
30492861 |
gtggtatatgatttgttgatgagaaaatatcaattgaaactgtaaaaaaaaaatactattaaaactttatttaaaatatgtcaaatcatcatattttaaa |
30492960 |
T |
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| Q |
430 |
tcaaatatttgatggatttaccaaaactaacaaatttgaaaatcatagatgtgtaagtttatgtattcaccgaaggagtatcaacatacgtgaagtatga |
529 |
Q |
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| T |
30492961 |
tcaaatatttgatggagagaccaaaactaacaaatttgaaaatcatagatgtgtaagtttatgtattcatcgaaagagtatcaacatacgtggagtatga |
30493060 |
T |
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| Q |
530 |
tatgaatcataatagt |
545 |
Q |
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| T |
30493061 |
tatgaatcataatagt |
30493076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 612 - 685
Target Start/End: Original strand, 30493145 - 30493218
Alignment:
| Q |
612 |
gtgatttgttcacaatgtaaatgtttttacagtgtacataaaatttttaacctgttaaggtatagtataatcta |
685 |
Q |
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| T |
30493145 |
gtgatttgttcacaatgtaaatgtttttacagtgtacataaaatttttaacctgttaaggtatagtataatcta |
30493218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 443
Target Start/End: Complemental strand, 2481 - 2436
Alignment:
| Q |
398 |
atttaaaatatgtcaaatcataatattttaaatcaaatatttgatg |
443 |
Q |
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| T |
2481 |
atttaaaatatatcatattattatattttaaatcaaatatttgatg |
2436 |
T |
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