View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16566_low_31 (Length: 359)
Name: NF16566_low_31
Description: NF16566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16566_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 19065531 - 19065197
Alignment:
| Q |
1 |
tgtctttgtattttcgtgtgcactgannnnnnnctcagttgtggcaattgcgccatccaaacatggtaattggtaaatagtgtgtgtgtaaatatatatt |
100 |
Q |
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| T |
19065531 |
tgtctttgtattttcgtgtgcactgatttttttctccgttgtggcaattgcgccatccaaacatggtaattggtaaatagtgtgtgtgtaaatatatatt |
19065432 |
T |
|
| Q |
101 |
acactgtataaacaatttctttcttcttttactatatttaataaaaagtgttcgttaaatttcagttggcgcaacagaaaaattcaaaataagtgttgaa |
200 |
Q |
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| T |
19065431 |
acactgcataaacaatttctttcttcttttactatatttaataaaaagtgttcgttaaatttcagttggcgcaacagaaaaattcaaaataagtgttgaa |
19065332 |
T |
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| Q |
201 |
tggaaaccgagacccggcccgagtgctgaaagctgggtaagaaataaaggtggacatggctcaggctcaagaggaaatgatggcggcaaaggtgaacgat |
300 |
Q |
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| T |
19065331 |
tggaaaccgagacccgggccgagtgctgaaagctgggtaagaaataaaggtggacatggctcaggctcaagaggaaatgatggcggcaaaggtgaacgat |
19065232 |
T |
|
| Q |
301 |
ttaaaggtggaaaacacaaagaaactgaacatgat |
335 |
Q |
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| T |
19065231 |
ttaaaggtggaaaacacaaagaaactgaacatgat |
19065197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 121 - 192
Target Start/End: Original strand, 17179399 - 17179470
Alignment:
| Q |
121 |
ttcttcttttactatatttaataaaaagtgttcgttaaatttcagttggcgcaacagaaaaattcaaaataa |
192 |
Q |
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||||||||||||||||||| ||||||| |||| ||| | || ||||||| |||||| || ||| |||||||| |
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| T |
17179399 |
ttcttcttttactatatttgataaaaattgtttgttgacttgcagttggtgcaacaaaagaatccaaaataa |
17179470 |
T |
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