View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16566_low_32 (Length: 357)
Name: NF16566_low_32
Description: NF16566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16566_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 208 - 289
Target Start/End: Original strand, 27262813 - 27262894
Alignment:
| Q |
208 |
ttgaattgagatagatgaaaacatagaaaatagccaagccacaaaaactacaaaagaatatactcaaaattgacctcatgat |
289 |
Q |
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| T |
27262813 |
ttgaattgagatagatgaaaatatagaaaatagccaagccacaaaaactacaaaagaatatactcaaaattgacctcatgat |
27262894 |
T |
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Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 73 - 147
Target Start/End: Original strand, 27262715 - 27262789
Alignment:
| Q |
73 |
aatttaaatgcagaaatttaatttatacgcatccaccatgttctcaattgtatccatacttaagctggtttcatt |
147 |
Q |
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| T |
27262715 |
aatttaaatgctgaaatttaatttatacgcatccaccgtgttctcaattgtatccatacttgagctcgtttcatt |
27262789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 303 - 347
Target Start/End: Original strand, 27262933 - 27262977
Alignment:
| Q |
303 |
tgtcacaacctacaaattgtcaaggtaaactttctcattcttctt |
347 |
Q |
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| T |
27262933 |
tgtcacaacctacaaattgtcaaggtaaactttcccattcttctt |
27262977 |
T |
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