View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16566_low_33 (Length: 348)

Name: NF16566_low_33
Description: NF16566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16566_low_33
NF16566_low_33
[»] chr7 (6 HSPs)
chr7 (10-328)||(40352866-40353185)
chr7 (20-179)||(2407563-2407727)
chr7 (31-201)||(41415641-41415816)
chr7 (96-172)||(7875714-7875792)
chr7 (96-179)||(2407349-2407434)
chr7 (93-179)||(40352662-40352750)
[»] chr8 (3 HSPs)
chr8 (20-203)||(18896426-18896614)
chr8 (10-203)||(30491698-30491894)
chr8 (20-91)||(11873627-11873698)
[»] chr4 (10 HSPs)
chr4 (21-179)||(4460402-4460564)
chr4 (48-199)||(29248016-29248173)
chr4 (114-177)||(39239085-39239148)
chr4 (96-179)||(4460190-4460275)
chr4 (93-174)||(8131817-8131899)
chr4 (96-191)||(49458345-49458441)
chr4 (23-86)||(8131624-8131687)
chr4 (155-202)||(39238790-39238837)
chr4 (112-149)||(8131554-8131591)
chr4 (111-178)||(30728497-30728568)
[»] chr5 (5 HSPs)
chr5 (19-177)||(16185211-16185374)
chr5 (37-181)||(17483408-17483556)
chr5 (96-201)||(5003496-5003603)
chr5 (96-178)||(16644999-16645083)
chr5 (20-86)||(5003733-5003799)
[»] chr3 (16 HSPs)
chr3 (30-181)||(6587938-6588089)
chr3 (20-200)||(36618810-36618992)
chr3 (96-199)||(47255525-47255630)
chr3 (20-179)||(11413270-11413431)
chr3 (20-179)||(29070057-29070213)
chr3 (20-179)||(30889095-30889248)
chr3 (20-151)||(3837264-3837396)
chr3 (94-179)||(11413559-11413645)
chr3 (95-182)||(49261974-49262062)
chr3 (21-148)||(52417923-52418053)
chr3 (99-172)||(23564412-23564487)
chr3 (93-145)||(54547934-54547986)
chr3 (96-178)||(3837054-3837135)
chr3 (96-146)||(30889363-30889412)
chr3 (93-181)||(36858542-36858633)
chr3 (93-150)||(36859735-36859792)
[»] chr1 (6 HSPs)
chr1 (105-199)||(33096029-33096125)
chr1 (96-203)||(23395112-23395221)
chr1 (96-203)||(35820058-35820167)
chr1 (96-146)||(7323320-7323370)
chr1 (128-202)||(35819785-35819861)
chr1 (20-86)||(35819893-35819959)
[»] chr6 (7 HSPs)
chr6 (97-181)||(2704886-2704972)
chr6 (96-212)||(1436009-1436125)
chr6 (45-149)||(11171352-11171457)
chr6 (96-179)||(8382095-8382180)
chr6 (20-86)||(8382304-8382370)
chr6 (95-175)||(24840754-24840835)
chr6 (114-180)||(24840470-24840537)
[»] chr2 (2 HSPs)
chr2 (20-179)||(38258658-38258823)
chr2 (20-203)||(43519335-43519521)
[»] scaffold0267 (1 HSPs)
scaffold0267 (20-151)||(12770-12903)
[»] scaffold0007 (2 HSPs)
scaffold0007 (114-203)||(201306-201397)
scaffold0007 (37-179)||(201561-201706)
[»] scaffold0010 (1 HSPs)
scaffold0010 (96-200)||(122415-122521)
[»] scaffold0734 (1 HSPs)
scaffold0734 (114-179)||(1907-1974)


Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 10 - 328
Target Start/End: Original strand, 40352866 - 40353185
Alignment:
Q  10 aagaatatgaaaagtcaaatgtggcatctcactttaagtgatgtggttgtcacgtatgcattaacttggtgaaaattcgtctaggtcaaaagtgcaaaat 109  Q
    ||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  40352866 aagaaaatgaaaagtcacatgtgacatctcactttaagtgatgtggttgtcacgtatgcattaatttggtgaaaattcgtctgggtcaaaagtgcaaaat 40352965  T
Q  110 aggataaacttaagaggctgatttgttattattttttatagggg--taaaattgcaagattgtgatacttagagaaacaaaactgtaattaagcctgtta 207  Q
    |||||||||||||||||||| ||||||||| |||||||||||||   || |||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  40352966 aggataaacttaagaggctggtttgttattgttttttatagggggcaaatattgcaagattgtgatacttagagaaacaaaactgtaactaagcccgtta 40353065  T
Q  208 aaaatgctcatattaagaacaattttgactgtagaccnnnnnnnnnnnnnnnagctgcacatacaatataatatgcaagtacgatttcatatagcctgta 307  Q
    ||||||||||||||||||||||||||||| |||||                 ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40353066 aaaatgctcatattaagaacaattttgacggtaga-ttttttttttttttttagctgcacatacaatataatatgcaagtacgatttcatatagcctgta 40353164  T
Q  308 gttatttctttttcttccgta 328  Q
    |||||||||||||||| ||||    
T  40353165 gttatttctttttctttcgta 40353185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 20 - 179
Target Start/End: Original strand, 2407563 - 2407727
Alignment:
Q  20 aaagtcaaatgtggcatctcactttaagtgatgtggttgtcacgtatgcattaacttggtgaaaattcgtc---taggtcaaaagtgcaaaataggataa 116  Q
    ||||||| |||||||| ||||||||||||||||||| ||||||||||||||| ||||| | |||||| |||     ||||||||||||||||| || |||    
T  2407563 aaagtcacatgtggcacctcactttaagtgatgtgggtgtcacgtatgcatttacttgatcaaaattggtcccaagggtcaaaagtgcaaaattgggtaa 2407662  T
Q  117 actta-agaggctgatttgttattat-tttttataggggtaaaattgcaagattgtgatacttag 179  Q
    |||||  | ||||||||||||||||| ||||||||||||  |||| |||||| ||||||||||||    
T  2407663 acttaggggggctgatttgttattatctttttataggggacaaatcgcaagagtgtgatacttag 2407727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 201
Target Start/End: Complemental strand, 41415816 - 41415641
Alignment:
Q  31 tggcatctcactttaagtgatgtggttgtcacgtatgcattaacttggtgaaaattcgtcta--ggtcaaaagtgcaaaataggataaactt-aagaggc 127  Q
    ||||| |||||||||| |||||||| || |||||||||||| |||| || ||||||  |||   || |||||||||||||  || ||||||| ||| |||    
T  41415816 tggcacctcactttaaatgatgtgggtgccacgtatgcattgacttagtcaaaattgatctgtgggccaaaagtgcaaaagggggtaaactttaaggggc 41415717  T
Q  128 tgatttgttattattttttataggggt--aaaattgcaagattgtgatacttagagaaacaaaactgtaattaagc 201  Q
    | |||||||||| ||||||||| |||   ||||| |||||||||||||||||||   | |||||||| ||||||||    
T  41415716 taatttgttattgttttttataaggggccaaaatcgcaagattgtgatacttaggtgaccaaaactgcaattaagc 41415641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 96 - 172
Target Start/End: Complemental strand, 7875792 - 7875714
Alignment:
Q  96 caaaagtgcaaaataggataaacttaagaggctgatttgttattattttttatagggg--taaaattgcaagattgtga 172  Q
    |||||||||||||  || |||||||||||||||||||||||||| |||||||||||||   ||||| ||||||||||||    
T  7875792 caaaagtgcaaaaatgggtaaacttaagaggctgatttgttattgttttttataggggaccaaaatcgcaagattgtga 7875714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 179
Target Start/End: Complemental strand, 2407434 - 2407349
Alignment:
Q  96 caaaagtgcaaaataggataaacttaagaggctgatttgttattattttttatagggg--taaaattgcaagattgtgatacttag 179  Q
    |||||||||||||  || |||||||| | ||||||||||||||| |||||||||||||   ||||| |||||||||||||||||||    
T  2407434 caaaagtgcaaaagggggtaaacttaggtggctgatttgttattgttttttataggggaccaaaatcgcaagattgtgatacttag 2407349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 179
Target Start/End: Complemental strand, 40352750 - 40352662
Alignment:
Q  93 ggtcaaaagtgcaaaataggataaacttaagaggctgatttgttattattttttatagggg--taaaattgcaagattgtgatacttag 179  Q
    ||||||||||| ||||  || |||||||| | ||||||||||||||| ||||||||||| |   ||||| |||||||||||||||||||    
T  40352750 ggtcaaaagtgtaaaaaggggtaaacttatggggctgatttgttattgttttttataggcgaccaaaatcgcaagattgtgatacttag 40352662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 203
Target Start/End: Complemental strand, 18896614 - 18896426
Alignment:
Q  20 aaagtcaaatgtggcatctcactttaagtgatgtggttgtcacgtatgcattaacttggtgaaaattcgtct-aggt--caaaagtgcaaaataggataa 116  Q
    ||||||| | |||||| ||||||||||||||||||| || |||  ||||||| ||||||| |||||| |||| |||   |||||||||||||  ||||||    
T  18896614 aaagtcacacgtggcacctcactttaagtgatgtgggtgccacacatgcattgacttggtcaaaattggtctgagggaccaaaagtgcaaaaggggataa 18896515  T
Q  117 acttaagaggctgatttgttattattttttatagggg--taaaattgcaagattgtgatacttagagaaacaaaactgtaattaagcct 203  Q
    ||||| | ||||||||| ||||| |||||||||||||   ||||| ||||||||||||| ||||| | | |||||||| ||||||||||    
T  18896514 acttagggggctgatttattattgttttttataggggaccaaaatcgcaagattgtgatgcttaggggaccaaaactgcaattaagcct 18896426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 30491698 - 30491894
Alignment:
Q  10 aagaatatgaaaagtcaaatgtggcatctcactttaagtgatgtggttgtcacgtatgcattaacttggtgaaaattcgtctaggt--caaaagtgcaaa 107  Q
    ||||||||  ||||||| | ||||||  |||||||||||||||||| || || ||||||||| ||||| | ||||||  | ||||   ||||||||||||    
T  30491698 aagaatatagaaagtcacacgtggcacatcactttaagtgatgtgggtgccatgtatgcattgacttgatcaaaattaat-taggggccaaaagtgcaaa 30491796  T
Q  108 ataggataaacttaagaggctgatttgttattattttttatag-gggt-aaaattgcaagattgtgatacttagagaaacaaaactgtaattaagcct 203  Q
    |  |||||||||||   || |||||||||||| |||||||||| |||| ||||| |||||||| |||||||||  |   |||||||| ||||||||||    
T  30491797 agtggataaacttagagggttgatttgttattgttttttatagagggtcaaaatcgcaagattatgatacttatggggtcaaaactgcaattaagcct 30491894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 11873698 - 11873627
Alignment:
Q  20 aaagtcaaatgtggcatctcactttaagtgatgtggttgtcacgtatgcattaacttggtgaaaattcgtct 91  Q
    ||||||| | |||||| |||| |||||||||||||| |||||||||| |||| | ||||| |||||| ||||    
T  11873698 aaagtcacacgtggcacctcattttaagtgatgtgggtgtcacgtatacattgatttggtcaaaattggtct 11873627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 21 - 179
Target Start/End: Original strand, 4460402 - 4460564
Alignment:
Q  21 aagtcaaatgtggcatctcactttaagtgatgtggttgtcacgtatgcattaacttggtgaaaattcgtc---taggtcaaaagtgcaaaataggataaa 117  Q
    |||||| | |||||| ||||||||||||||||||| ||||||||||||||| ||||||| |||||| |||    ||| ||||||| |||||  || ||||    
T  4460402 aagtcacacgtggcacctcactttaagtgatgtgggtgtcacgtatgcattgacttggtcaaaattggtccggaaggccaaaagtccaaaaagggttaaa 4460501  T
Q  118 cttaagaggctgatttgttattattttttatagggg--taaaattgcaagattgtgatacttag 179  Q
     ||||| |||||||||||||||  ||||||||||||   ||||| |||||||||||||||||||    
T  4460502 tttaaggggctgatttgttatt-gtttttataggggaccaaaatcgcaagattgtgatacttag 4460564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 199
Target Start/End: Complemental strand, 29248173 - 29248016
Alignment:
Q  48 tgatgtggttgtcacgtatgcattaacttggtgaaaattcgtctagg----tcaaaagtgcaaaataggataaacttaagagg-ctgatttgttattatt 142  Q
    |||||||| || ||| |||||||||||||||| |||||| || | ||    |||||||||||||||    ||||||||||||| ||||||||||| ||||    
T  29248173 tgatgtgggtgccacatatgcattaacttggtcaaaattggt-tcggagaatcaaaagtgcaaaatgatgtaaacttaagagggctgatttgttaatatt 29248075  T
Q  143 ttttatagggg--taaaattgcaagattgtgatacttagagaaacaaaactgtaattaa 199  Q
    |||||||||||   ||||||  |||||||||||||||||||   |||||||| ||||||    
T  29248074 ttttataggggatcaaaattagaagattgtgatacttagagggccaaaactgcaattaa 29248016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 177
Target Start/End: Original strand, 39239085 - 39239148
Alignment:
Q  114 taaacttaagaggctgatttgttattattttttataggggtaaaattgcaagattgtgatactt 177  Q
    |||||||| | || |||||||||||| ||||||||||||||||||| |||||||||| ||||||    
T  39239085 taaacttagggggttgatttgttattgttttttataggggtaaaatcgcaagattgtaatactt 39239148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 96 - 179
Target Start/End: Complemental strand, 4460275 - 4460190
Alignment:
Q  96 caaaagtgcaaaataggataaacttaagaggctgatttgttattattttttatagggg--taaaattgcaagattgtgatacttag 179  Q
    |||||||||||||  || |||||||| | | |||||||||||||||||||||||||||   |||||  ||||||||||||||||||    
T  4460275 caaaagtgcaaaagggggtaaacttaggggactgatttgttattattttttatagggggtcaaaatcacaagattgtgatacttag 4460190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 93 - 174
Target Start/End: Original strand, 8131817 - 8131899
Alignment:
Q  93 ggtcaaaagtgcaaaataggataaacttaagaggctgatttgttattattttttatagg--ggtaaaattgcaagattgtgata 174  Q
    |||||||||||||||| |||||||||||| | || |||||||||||| |||||||||||  |  |||||||||| |||||||||    
T  8131817 ggtcaaaagtgcaaaagaggataaacttatggggttgatttgttatt-ttttttatagggagcaaaaattgcaaaattgtgata 8131899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 96 - 191
Target Start/End: Original strand, 49458345 - 49458441
Alignment:
Q  96 caaaagtgcaaaataggataaacttaagaggctgatttgttattattttttata-ggggtaaaattgcaagattgtgatacttagagaaacaaaact 191  Q
    ||||||||||||| |||||||||||| |||| |||||||||||| ||| ||||| |    |||||||||||||||||||| |||  ||| |||||||    
T  49458345 caaaagtgcaaaagaggataaacttaggaggttgatttgttattgtttattatatgaacaaaaattgcaagattgtgatatttaaggaaccaaaact 49458441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 8131687 - 8131624
Alignment:
Q  23 gtcaaatgtggcatctcactttaagtgatgtggttgtcacgtatgcattaacttggtgaaaatt 86  Q
    |||| |||||||| ||||||||||||||||| | ||||||||||| ||| ||||||| ||||||    
T  8131687 gtcacatgtggcacctcactttaagtgatgtaggtgtcacgtatgtattgacttggtcaaaatt 8131624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 155 - 202
Target Start/End: Complemental strand, 39238837 - 39238790
Alignment:
Q  155 aaaattgcaagattgtgatacttagagaaacaaaactgtaattaagcc 202  Q
    ||||| ||||||||||||||||||||||  |||||||| |||||||||    
T  39238837 aaaatcgcaagattgtgatacttagagagtcaaaactgcaattaagcc 39238790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 8131591 - 8131554
Alignment:
Q  112 gataaacttaagaggctgatttgttattattttttata 149  Q
    ||||||||||||||||||||||  ||||||||||||||    
T  8131591 gataaacttaagaggctgatttaatattattttttata 8131554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 178
Target Start/End: Complemental strand, 30728568 - 30728497
Alignment:
Q  111 ggataaacttaagaggctgatttgttattatttttt--ataggggt--aaaattgcaagattgtgatactta 178  Q
    ||||||||||||| | ||||||||||||| ||||||  |||| ||   ||||||||||||||||||||||||    
T  30728568 ggataaacttaagggactgatttgttattgttttttttatagaggatcaaaattgcaagattgtgatactta 30728497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 177
Target Start/End: Complemental strand, 16185374 - 16185211
Alignment:
Q  19 aaaagtcaaatgtggcatctcactttaagtgatgtggttgtcacgtatgcattaacttggtgaaaattcgtct--aggtc-aaaagtgcaaaataggata 115  Q
    |||||||| |||||||| ||||||||||||||||||  || ||| |||||||  ||||||| |||||| || |  ||| | |||||||||||| | | ||    
T  16185374 aaaagtcacatgtggcacctcactttaagtgatgtgtgtgccacatatgcatcgacttggtcaaaattggtttgaagggcaaaaagtgcaaaagatggta 16185275  T
Q  116 aacttaagaggctgatttgttattattttttata--ggggtaaaattgcaagattgtgatactt 177  Q
    |||||||| ||||||||||||||| |||||||||  ||| |||||| |||||||||||||||||    
T  16185274 aacttaaggggctgatttgttattgttttttatacggggctaaaatcgcaagattgtgatactt 16185211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 37 - 181
Target Start/End: Original strand, 17483408 - 17483556
Alignment:
Q  37 ctcactttaagtgatgtggttgtcacgtatgcattaacttggtgaaaattcgtct--aggtcaaaagtgcaaaataggataaacttaagaggctgatttg 134  Q
    ||||||||||||||||||| ||||||| ||  ||||||||||| |||||| || |  ||| ||||||||||||||  | |||||||| | |||| |||||    
T  17483408 ctcactttaagtgatgtgggtgtcacgcatatattaacttggtcaaaattggtttgaaggccaaaagtgcaaaatgaggtaaacttagggggctaatttg 17483507  T
Q  135 ttattattttttata-ggggt-aaaattgcaagattgtgatacttagag 181  Q
     |||||||||||||| | |||  |||| ||||||||||||||| |||||    
T  17483508 gtattattttttatatgaggtcgaaatcgcaagattgtgatacatagag 17483556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 96 - 201
Target Start/End: Complemental strand, 5003603 - 5003496
Alignment:
Q  96 caaaagtgcaaaataggataaacttaagaggctgatttgttattattttttataggggt--aaaattgcaagattgtgatacttagagaaacaaaactgt 193  Q
    |||||||||||||  |||||||||||   || |||||||||||| ||||||||| |||   ||||| ||||||||||||||||||||| | ||||||||     
T  5003603 caaaagtgcaaaaggggataaacttagagggttgatttgttattgttttttataagggatcaaaatcgcaagattgtgatacttagaggaccaaaactgc 5003504  T
Q  194 aattaagc 201  Q
    ||||||||    
T  5003503 aattaagc 5003496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 178
Target Start/End: Complemental strand, 16645083 - 16644999
Alignment:
Q  96 caaaagtgcaaaataggataaacttaagaggctgatttgttattattttttatagggg--taaaattgcaagattgtgatactta 178  Q
    |||| ||||||||| || |||||||| | ||||||||||| ||| |||||||||||||  |||||| |||| |||||||||||||    
T  16645083 caaacgtgcaaaatggggtaaacttagggggctgatttgtgattgttttttataggggactaaaatcgcaaaattgtgatactta 16644999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 5003733 - 5003799
Alignment:
Q  20 aaagtcaaatgtggcatctcactttaagtgatgtggttgtcacgtatgcattaacttggtgaaaatt 86  Q
    ||||||| | |||||| ||||||||||||| ||||| || |||||||| ||| ||||||| ||||||    
T  5003733 aaagtcacacgtggcacctcactttaagtggtgtgggtgccacgtatgtattgacttggtcaaaatt 5003799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 30 - 181
Target Start/End: Complemental strand, 6588089 - 6587938
Alignment:
Q  30 gtggcatctcactttaagtgatgtggttgtcacgtatgcattaacttggtgaaaattcgtc-taggtcaaaagtgcaaaataggataaacttaagaggct 128  Q
    |||||| ||||||| ||||||||||| || || ||||||||||||||||| |||||| ||| | || |||||||||||||  || |||||||| | ||||    
T  6588089 gtggcacctcactt-aagtgatgtgggtgccatgtatgcattaacttggtcaaaattggtcttgggccaaaagtgcaaaagggggtaaacttatg-ggct 6587992  T
Q  129 gatttgttattattttttatagggg--taaaattgcaagattgtgatacttagag 181  Q
    |||||||||||  ||||||||||||   |||||||||||||||||||||||||||    
T  6587991 gatttgttatt-gtttttatagggggcgaaaattgcaagattgtgatacttagag 6587938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 36618810 - 36618992
Alignment:
Q  20 aaagtcaaatgtggcatctcactttaagtgatgtggttgtcacgtatgcattaacttggtgaaaattcgtct-aggtcaaaagtgcaaaataggataaac 118  Q
    ||||||| ||||| |  ||| ||||||||||||||| ||||| ||||||||| ||||||| |||||| ||||  || ||||||||||| |  || |||||    
T  36618810 aaagtcacatgtgactcctcgctttaagtgatgtgggtgtcatgtatgcattgacttggtcaaaattggtctggggccaaaagtgcaacagggggtaaac 36618909  T
Q  119 ttaagaggctgatttgttattattttttatagggg--taaaattgcaagattgtgatacttagagaaacaaaactgtaattaag 200  Q
    ||||||| || ||||||||||  ||||||||||||   |||||  ||||||| |||||||||| | | ||||||||||||||||    
T  36618910 ttaagagactcatttgttatt-gtttttatagggggtcaaaatcacaagattatgatacttaggggatcaaaactgtaattaag 36618992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 96 - 199
Target Start/End: Original strand, 47255525 - 47255630
Alignment:
Q  96 caaaagtgcaaaataggataaacttaagaggctgatttgttattattttttatagggg--taaaattgcaagattgtgatacttagagaaacaaaactgt 193  Q
    ||||||||||||| ||| ||||||||   ||||||||||||||||||||||| |||||  ||||||||||||||| |||||||||  | | |||||||||    
T  47255525 caaaagtgcaaaagagggtaaacttagagggctgatttgttattattttttaaaggggactaaaattgcaagattatgatacttaacggaccaaaactgt 47255624  T
Q  194 aattaa 199  Q
    ||||||    
T  47255625 aattaa 47255630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 179
Target Start/End: Complemental strand, 11413431 - 11413270
Alignment:
Q  20 aaagtcaaatgtggcatctcactttaagtgatgtggttgtcacgtatgcattaacttggtgaaaattcgtct--aggtcaaaagtgcaaaataggataaa 117  Q
    ||||||| |||||||| ||||||||||||||||||| |  |||||||||||| ||||||| ||||||  |||   || ||||| |||||||  |  ||||    
T  11413431 aaagtcatatgtggcacctcactttaagtgatgtgggttccacgtatgcattgacttggtcaaaattgatctgagggccaaaactgcaaaa-ggtgtaaa 11413333  T
Q  118 cttaagaggctgatttgttattattttttata-ggggtaaaattgcaagattgtgatacttag 179  Q
    |||||| |||||||||| |||| ||||||| | |||  ||||| |||||||||||||||||||    
T  11413332 cttaaggggctgatttgatattgttttttaaatgggaaaaaatcgcaagattgtgatacttag 11413270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 179
Target Start/End: Original strand, 29070057 - 29070213
Alignment:
Q  20 aaagtcaaatgtggcatctcactttaagtgatgtggttgtcacgtatgcattaacttggtgaaaattcgtctagg-tcaaaagtgcaaaataggataaac 118  Q
    ||||||| | |||||| ||||||||||||||||||| || ||| |||||||| ||||||| |||||| |||| ||  |||||||||||||  || |||||    
T  29070057 aaagtcacacgtggcacctcactttaagtgatgtgggtgccacatatgcattgacttggttaaaattggtctgggaccaaaagtgcaaaagggggtaaac 29070156  T
Q  119 ttaagaggctgatttgttatt-attttttataggggtaaaattgcaagattgtgatacttag 179  Q
    |||||     || ||||||||  |||||||| |||  |||||||||||||||| ||||||||    
T  29070157 ttaag-----gacttgttattgtttttttatggggccaaaattgcaagattgtaatacttag 29070213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 179
Target Start/End: Complemental strand, 30889248 - 30889095
Alignment:
Q  20 aaagtcaaatgtggcatctcactttaagtgatgtggttgtcacgtatgcattaacttggtgaaaattcgtctaggtcaaaagtgcaaaataggataaact 119  Q
    ||||||| ||||||||  |||| ||||||||||||| || |||| ||||||| | ||||| |||||       || |||||||||||||| |  ||||||    
T  30889248 aaagtcacatgtggcacttcacattaagtgatgtgggtgacacgcatgcattgatttggtcaaaat-------ggccaaaagtgcaaaatggagtaaact 30889156  T
Q  120 taagaggctgatttgttattattttttatagggg--taaaattgcaagattgtgatacttag 179  Q
    || ||||||||||||||||| |||||||||||||   ||||| |||||| ||||| ||||||    
T  30889155 ta-gaggctgatttgttattgttttttatagggggccaaaatcgcaagactgtgacacttag 30889095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 151
Target Start/End: Original strand, 3837264 - 3837396
Alignment:
Q  20 aaagtcaaatgtggcatctcactttaagtgatgtggttgtcacgtatgcattaacttggtgaaaattcgtct--aggtcaaaagtgcaaaataggataaa 117  Q
    ||||||| | || ||| ||||||||||||||||||| || ||| |||||||| ||||||| |||| |  |||  ||| |||||||||||||  || ||||    
T  3837264 aaagtcacacgtagcacctcactttaagtgatgtgggtgccacatatgcattgacttggtcaaaactgatctgcaggccaaaagtgcaaaa-ggggtaaa 3837362  T
Q  118 cttaagaggctgatttgttattattttttatagg 151  Q
     ||||| ||||||||||||||| |||||| ||||    
T  3837363 tttaaggggctgatttgttattgttttttctagg 3837396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 94 - 179
Target Start/End: Original strand, 11413559 - 11413645
Alignment:
Q  94 gtcaaaagtgcaaaataggataaacttaagaggctgatttgttattattttttata-ggggtaaaattgcaagattgtgatacttag 179  Q
    |||||||||||||||   | ||||||||   || |||||||||||||||||||||| ||||| |||| |||||||||||||||||||    
T  11413559 gtcaaaagtgcaaaaagaggtaaacttagagggttgatttgttattattttttatagggggtcaaatcgcaagattgtgatacttag 11413645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 95 - 182
Target Start/End: Complemental strand, 49262062 - 49261974
Alignment:
Q  95 tcaaaagtgcaaaataggataaacttaagaggctgatttgttattattttttatagggg--taaaattgcaagattgtgatacttagaga 182  Q
    ||||||||| |||| ||| |||||||| |||| |||||| ||||||| |||||||||||   ||||| ||||||||||||||||||||||    
T  49262062 tcaaaagtgtaaaagagggtaaacttaggaggttgatttattattat-ttttatagggggccaaaatcgcaagattgtgatacttagaga 49261974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 21 - 148
Target Start/End: Complemental strand, 52418053 - 52417923
Alignment:
Q  21 aagtcaaatgtggcatctcactttaagtgatgtggttgtcacgtatgcattaacttggtgaaaattcgtct---aggtcaaaagtgcaaaataggataaa 117  Q
    |||||| | |||||| ||||||||||||||||||  || ||| |||||| |||||| || |||||| || |   ||| |||||||||||||  ||  |||    
T  52418053 aagtcacacgtggcacctcactttaagtgatgtgagtgccacatatgcactaacttagtcaaaattggtttgggaggccaaaagtgcaaaagggggaaaa 52417954  T
Q  118 cttaagaggctgatttgttattattttttat 148  Q
    |||| | ||||||||||||||| ||||||||    
T  52417953 cttacggggctgatttgttattgttttttat 52417923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 172
Target Start/End: Original strand, 23564412 - 23564487
Alignment:
Q  99 aagtgcaaaataggataaacttaagaggctgatttgttattattttttata--ggggtaaaattgcaagattgtga 172  Q
    ||||||||||| || |||||||| |||| |||||||||| | |||||||||  ||| |||||| ||||||||||||    
T  23564412 aagtgcaaaatggggtaaacttaggaggttgatttgttagtgttttttataaggggttaaaatcgcaagattgtga 23564487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 145
Target Start/End: Complemental strand, 54547986 - 54547934
Alignment:
Q  93 ggtcaaaagtgcaaaataggataaacttaagaggctgatttgttattattttt 145  Q
    ||||||||||| |||||| | |||||||||||| ||||||||||||| |||||    
T  54547986 ggtcaaaagtgtaaaatatggtaaacttaagagactgatttgttattgttttt 54547934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 96 - 178
Target Start/End: Complemental strand, 3837135 - 3837054
Alignment:
Q  96 caaaagtgcaaaataggataaacttaagaggctgatttgttattattttttataggggt-aaaattgcaagattgtgatactta 178  Q
    |||||||||||||  || |||||||||| ||||||||||||||| | |||||| | ||  ||||||||||||||||||||||||    
T  3837135 caaaagtgcaaaagggg-taaacttaag-ggctgatttgttattgtattttatggaggccaaaattgcaagattgtgatactta 3837054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 146
Target Start/End: Original strand, 30889363 - 30889412
Alignment:
Q  96 caaaagtgcaaaataggataaacttaagaggctgatttgttattatttttt 146  Q
    ||||||||||||||||| |||||||| | ||||||||||||||| ||||||    
T  30889363 caaaagtgcaaaatagg-taaacttagggggctgatttgttattgtttttt 30889412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 181
Target Start/End: Complemental strand, 36858633 - 36858542
Alignment:
Q  93 ggtcaaaagtgcaaaataggataaacttaagaggctgatttgttattattttttatagggg---taaaattgcaagattgtgatacttagag 181  Q
    ||||||||||||||||  ||||||||||| | |||| ||| ||||||  ||||||||||||    ||||||| ||| | |||||||||||||    
T  36858633 ggtcaaaagtgcaaaaggggataaacttaggtggctaattagttattgctttttataggggggccaaaattgtaagttcgtgatacttagag 36858542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 150
Target Start/End: Original strand, 36859735 - 36859792
Alignment:
Q  93 ggtcaaaagtgcaaaataggataaacttaagaggctgatttgttattattttttatag 150  Q
    ||||||||||| |||| ||| |||||||| | |||||||| |||||| ||||||||||    
T  36859735 ggtcaaaagtgtaaaagagggtaaacttatggggctgattagttattgttttttatag 36859792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 105 - 199
Target Start/End: Complemental strand, 33096125 - 33096029
Alignment:
Q  105 aaaataggataaacttaagaggctgatttgttattattttttatagggg--taaaattgcaagattgtgatacttagagaaacaaaactgtaattaa 199  Q
    ||||| || |||||||||||||||||||||||||||||||||||| |||   ||||||||||||||| |||| ||||||   |||||||| ||||||    
T  33096125 aaaatggggtaaacttaagaggctgatttgttattattttttataagggaccaaaattgcaagattgcgatatttagagggccaaaactgcaattaa 33096029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 96 - 203
Target Start/End: Complemental strand, 23395221 - 23395112
Alignment:
Q  96 caaaagtgcaaaataggataaacttaagagg-ctgatttgttattattttttataggggt-aaaattgcaagattgtgatacttagagaaacaaaactgt 193  Q
    |||||||||||||  || |||||||| | || ||||||||||||| ||| |||||||||| ||||| ||||||||||||||||||| | | |||||||      
T  23395221 caaaagtgcaaaagtgggtaaacttaggggggctgatttgttattgtttcttataggggtcaaaatcgcaagattgtgatacttaggggaccaaaactac 23395122  T
Q  194 aattaagcct 203  Q
    ||||||||||    
T  23395121 aattaagcct 23395112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 96 - 203
Target Start/End: Original strand, 35820058 - 35820167
Alignment:
Q  96 caaaagtgcaaaataggataaacttaagaggctgatttgttatta-ttttttatagggg--taaaattgcaagattgtgatacttagagaaacaaaactg 192  Q
    |||||||||||||  || |||||||| | |||||||||||||||| |||||||||||||   ||||| ||||||||||||||||||| |   ||||||||    
T  35820058 caaaagtgcaaaagggg-taaacttagggggctgatttgttattatttttttatagggggccaaaatcgcaagattgtgatacttagggggccaaaactg 35820156  T
Q  193 taattaagcct 203  Q
     ||||||||||    
T  35820157 caattaagcct 35820167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 146
Target Start/End: Complemental strand, 7323370 - 7323320
Alignment:
Q  96 caaaagtgcaaaataggataaacttaagaggctgatttgttattatttttt 146  Q
    ||||||||||||||||| |||||||| ||||||||||| ||||| ||||||    
T  7323370 caaaagtgcaaaatagggtaaacttaggaggctgatttattattgtttttt 7323320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 202
Target Start/End: Complemental strand, 35819861 - 35819785
Alignment:
Q  128 tgatttgttattattttttataggg--gtaaaattgcaagattgtgatacttagagaaacaaaactgtaattaagcc 202  Q
    |||||||||||| ||||||||||||  | ||||| ||||||||||||||||||| |   |||||||| |||||||||    
T  35819861 tgatttgttattgttttttatagggtggcaaaatcgcaagattgtgatacttagggggccaaaactgaaattaagcc 35819785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 35819959 - 35819893
Alignment:
Q  20 aaagtcaaatgtggcatctcactttaagtgatgtggttgtcacgtatgcattaacttggtgaaaatt 86  Q
    ||||||| | |||||| |||||||||||||| |||| || |||||||||||| || |||| ||||||    
T  35819959 aaagtcacacgtggcacctcactttaagtgacgtgggtgccacgtatgcattgacgtggtcaaaatt 35819893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 97 - 181
Target Start/End: Original strand, 2704886 - 2704972
Alignment:
Q  97 aaaagtgcaaaataggataaacttaagaggctgatttgttattattttttataggg--gtaaaattgcaagattgtgatacttagag 181  Q
    |||||||||||| |||||||||||||  ||||||||| ||||||||||||||||||   ||| || |||||||||||||||| ||||    
T  2704886 aaaagtgcaaaagaggataaacttaaagggctgatttattattattttttatagggaactaagatcgcaagattgtgatactcagag 2704972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 212
Target Start/End: Complemental strand, 1436125 - 1436009
Alignment:
Q  96 caaaagtgcaaaataggataaacttaagaggctgatttgttattattttttatagg-ggt-aaaattgcaagattgtgatacttagagaaacaaaactgt 193  Q
    |||||||||||||  || |||||||| | |||| |||||||||||||||||||||| ||| |||||||||||||||||||| |||| |  |||||||||     
T  1436125 caaaagtgcaaaagggg-taaacttaggcggcttatttgttattattttttataggaggtcaaaattgcaagattgtgatatttagggggacaaaactgc 1436027  T
Q  194 aattaagcctgttaaaaat 212  Q
    |||||| |||| |||||||    
T  1436026 aattaa-cctggtaaaaat 1436009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 149
Target Start/End: Complemental strand, 11171457 - 11171352
Alignment:
Q  45 aagtgatgtggttgtcacgtatgcattaacttggtgaaaattcgtct--aggtcaaaagtgcaaaataggataaacttaagaggctgatttgttattatt 142  Q
    ||||||| ||| |||||| |||||||||| ||| | |||||| |||   ||| ||||||||||||| ||||||||| || ||| ||||||||||||| ||    
T  11171457 aagtgatatgggtgtcacatatgcattaatttgattaaaattggtcggaaggccaaaagtgcaaaagaggataaacataggag-ctgatttgttattgtt 11171359  T
Q  143 ttttata 149  Q
    |||||||    
T  11171358 ttttata 11171352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 179
Target Start/End: Complemental strand, 8382180 - 8382095
Alignment:
Q  96 caaaagtgcaaaataggataaacttaagaggctgatttgttattattttttataggggt--aaaattgcaagattgtgatacttag 179  Q
    |||||||||||||  |  ||||||||  || ||||||||||||| ||||||||| |||   |||||||||||||||||||||||||    
T  8382180 caaaagtgcaaaagggagtaaacttagcagactgatttgttattgttttttataagggatcaaaattgcaagattgtgatacttag 8382095  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 8382304 - 8382370
Alignment:
Q  20 aaagtcaaatgtggcatctcactttaagtgatgtggttgtcacgtatgcattaacttggtgaaaatt 86  Q
    ||||||| | |||||| ||||||||||||| ||||| || |||||||||||| ||||||| ||||||    
T  8382304 aaagtcacacgtggcacctcactttaagtggtgtgggtgccacgtatgcattgacttggtcaaaatt 8382370  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 175
Target Start/End: Original strand, 24840754 - 24840835
Alignment:
Q  95 tcaaaagtgcaaaataggataaacttaagaggctgatttgttattattttttatag-gggtaaaattgcaagattgtgatac 175  Q
    ||||||||||||||  || |||  ||| ||||||||||||||||| ||||||||||  |  ||||| |||||||||||||||    
T  24840754 tcaaaagtgcaaaagcgggtaattttaggaggctgatttgttattgttttttatagaagccaaaatcgcaagattgtgatac 24840835  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 180
Target Start/End: Complemental strand, 24840537 - 24840470
Alignment:
Q  114 taaacttaagaggctgatttgttattatttttta-taggggtaaaatt-gcaagattgtgatacttaga 180  Q
    |||||||||||| |||||||||||||||||||||  || || |||||| |||||||| |||||||||||    
T  24840537 taaacttaagag-ctgatttgttattattttttagaagtggcaaaattcgcaagattatgatacttaga 24840470  T

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Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 20 - 179
Target Start/End: Original strand, 38258658 - 38258823
Alignment:
Q  20 aaagtcaaatgtggcatctcactttaagtgatgtggttgtcacgtatgcattaacttggtgaaaattcgtctag---gtcaaaagtgcaaaataggataa 116  Q
    ||||||| |||||||||||||||||||||||| ||| || ||||||| |||| ||||||| |||||| |||| |   |||||||||||  ||  || |||    
T  38258658 aaagtcacatgtggcatctcactttaagtgatatgggtgacacgtatacattgacttggtcaaaattggtctggagtgtcaaaagtgc-caagggggtaa 38258756  T
Q  117 acttaagaggctgatttgttattattttttata----ggggtaaaattgcaagattgtgatacttag 179  Q
    || || | ||||||||||||||| |||||| ||    |||  ||||| |||||||||||||||||||    
T  38258757 acgtagggggctgatttgttattgttttttttacagggggccaaaatcgcaagattgtgatacttag 38258823  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 203
Target Start/End: Original strand, 43519335 - 43519521
Alignment:
Q  20 aaagtcaaatgtggcatctcactttaagtgatgtggttgtcacgtatgcattaacttggtgaaaattcgtctagg--tcaaaagtgcaaaataggataaa 117  Q
    ||||||| | ||| || ||||||||| ||||||||| || |||||||||||| ||||||| |||||| |||| ||   |||||||||||||   | ||||    
T  43519335 aaagtcacacgtgtcacctcactttaggtgatgtgggtgccacgtatgcattgacttggtcaaaattggtctggggaccaaaagtgcaaaaggtggtaaa 43519434  T
Q  118 cttaagaggctgatttgttatt-attttttataggggtaaaattgcaagattgtgatacttagagaaacaaaactgtaattaagcct 203  Q
    |||| | |||||||||||  ||  |||||||||| |  ||| | ||||||||||||||||||  |   |||||||| ||||||||||    
T  43519435 cttagggggctgatttgtcgttgtttttttatagagtcaaagtcgcaagattgtgatacttaagggcccaaaactgcaattaagcct 43519521  T

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Target: scaffold0267 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 151
Target Start/End: Original strand, 12770 - 12903
Alignment:
Q  20 aaagtcaaatgtggcatctcactttaagtgatgtggttgtcacgtatgcattaacttggtgaaaattcgtc--taggtcaaaagtgcaaaataggataaa 117  Q
    ||||||| | || ||| ||||||||||||||||||| || ||| ||| |||| ||||||| |||| |  ||  |||| |||||||||||||  || ||||    
T  12770 aaagtcacacgtagcacctcactttaagtgatgtgggtgccacatatacattgacttggtcaaaactgatctgtaggccaaaagtgcaaaagggggtaaa 12869  T
Q  118 cttaagaggctgatttgttattattttttatagg 151  Q
     ||| | ||||||||||||||| |||||| ||||    
T  12870 tttagggggctgatttgttattgttttttctagg 12903  T

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Target: scaffold0007 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 114 - 203
Target Start/End: Complemental strand, 201397 - 201306
Alignment:
Q  114 taaacttaagaggctgatttgttattattttttatag-gggt-aaaattgcaagattgtgatacttagagaaacaaaactgtaattaagcct 203  Q
    |||||||| | ||||||||| ||||| ||||||| || |||| ||||| ||||||||||||||||||| |   |||||||| ||||||||||    
T  201397 taaacttagggggctgatttattattgttttttacagagggtcaaaatcgcaagattgtgatacttagggggtcaaaactgcaattaagcct 201306  T

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Target: scaffold0007; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 179
Target Start/End: Original strand, 201561 - 201706
Alignment:
Q  37 ctcactttaagtgatgtggttgtcacgtatgcattaacttggtgaaaattcgtct--aggtcaaaagtgcaaaataggataaacttaagaggctgatttg 134  Q
    ||||||||||||||||||| || | ||||||||||  |||| | |||||| ||||   || |||||||||||||  || ||||| || | || || ||||    
T  201561 ctcactttaagtgatgtgggtgccgcgtatgcattggcttgatcaaaattggtctgggggccaaaagtgcaaaagggggtaaacatagggggttggtttg 201660  T
Q  135 ttattattttttatagggg--taaaattgcaagattgtgatacttag 179  Q
    |||||  ||||||||||||  ||||||   |||||||||||||||||    
T  201661 ttatt-gtttttatagggggctaaaatcataagattgtgatacttag 201706  T

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Target: scaffold0010 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 200
Target Start/End: Complemental strand, 122521 - 122415
Alignment:
Q  96 caaaagtgcaaaataggataaacttaagaggctgatttgttattattttt-tataggggt-aaaattgcaagattgtgatacttagagaaacaaaactgt 193  Q
    |||||||||||||  || |||| ||||| ||||||||||||||| ||||| || | |||| ||||| |||||||||| |||||||  | | ||||||||     
T  122521 caaaagtgcaaaagggggtaaatttaaggggctgatttgttattgtttttatagaagggtcaaaatcgcaagattgtaatacttatgggatcaaaactgc 122422  T
Q  194 aattaag 200  Q
    |||||||    
T  122421 aattaag 122415  T

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Target: scaffold0734 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0734
Description:

Target: scaffold0734; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 179
Target Start/End: Complemental strand, 1974 - 1907
Alignment:
Q  114 taaacttaagaggctgatttgttattattttttatagggg--taaaattgcaagattgtgatacttag 179  Q
    ||||| |||| ||||||||||||||| |||||||||||||   |||||  |||||||||| |||||||    
T  1974 taaacataaggggctgatttgttattgttttttataggggaccaaaatctcaagattgtgttacttag 1907  T

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