View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16566_low_34 (Length: 337)
Name: NF16566_low_34
Description: NF16566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16566_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 15 - 321
Target Start/End: Complemental strand, 14757435 - 14757129
Alignment:
| Q |
15 |
gacagacatgttatcagcatttaaaatgcccatatcacgtacatcaaagttcatttcagcattcttactaacaaacatgtaaacattatcaacaacactc |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
14757435 |
gacagacatgttatcagcatttaaaatgcccatatcacgtacatcaaagttcatttcagcatttttactaacaaacatgtaaacattatcaacaacactc |
14757336 |
T |
|
| Q |
115 |
tttggatcagcctctccaactgcaggacctataccccagtcagcaaacagagttgtcccaggtgtagagtcgaatcgtgctatttcagcacacacagttg |
214 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
14757335 |
tttggatcagcctctccaacagcaggacctataccccagtcagcaaacagagttgtcccaggtgtagagtcgaatcttgctatttcagcacatacagttg |
14757236 |
T |
|
| Q |
215 |
cagcagaagtgttttgctgcatcagttctttgatccgatcatatggcattcgtgttatttgccaatatcgtgtgatcagctcaagactcggattcacacg |
314 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||| |
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| T |
14757235 |
cagcagaagtgttttgctgcatcagttctttcatccgatcatatggcattcgtgttatttgccaatatcgtgtgatcagctcaggacgcggattaacacg |
14757136 |
T |
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| Q |
315 |
aactata |
321 |
Q |
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||||||| |
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| T |
14757135 |
aactata |
14757129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 15 - 297
Target Start/End: Complemental strand, 3613612 - 3613350
Alignment:
| Q |
15 |
gacagacatgttatcagcatttaaaatgcccatatcacgtacatcaaagttcatttcagcattcttactaacaaacatgtaaacattatcaacaacactc |
114 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
3613612 |
gacagacatgttatcagcattcaaaatgcccatatcacgtacatcaaagttcatttcaacattcttactaacaaacatgtaaacattatcaacaaaactc |
3613513 |
T |
|
| Q |
115 |
tttggatcagcctctccaactgcaggacctataccccagtcagcaaacagagttgtcccaggtgtagagtcgaatcgtgctatttcagcacacacagttg |
214 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||| || ||| ||| ||||||||| ||||| | |
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| T |
3613512 |
tttggatcagcc--------------------accccagtcagcaaacagagttgtcccaggtgtagactcaaatgttgcaatttcagcaagaacagtag |
3613433 |
T |
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| Q |
215 |
cagcagaagtgttttgctgcatcagttctttgatccgatcatatggcattcgtgttatttgccaatatcgtgtgatcagctca |
297 |
Q |
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|||| | | |||||| ||||| || ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
3613432 |
cagctggtgagttttgatgcattagctctttcatccgatcatatggcattcgtgttatttgccaatatctcgtgatcagctca |
3613350 |
T |
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