View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16566_low_40 (Length: 307)
Name: NF16566_low_40
Description: NF16566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16566_low_40 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 1855153 - 1854856
Alignment:
| Q |
1 |
tggaacttttacacctccacaagtgtaattgcagccaggtaggacttgtttaggttgatcagatgcaagtgtaaatgcaactgcttctatcaaatgtgct |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1855153 |
tggaacttttacacctccacaggtgtaattgcagcctggtaggacttgtttaggttgatcagatgcaagtgtaaatgcaactgcttctatcaaatgtgct |
1855054 |
T |
|
| Q |
101 |
aatgcagcaagtattattaatacttgcaggaccttcatttttaaattggagtactgactgacttgtggcctagagtaagggtgtttcgttatttataata |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1855053 |
aatgcagcaagtattattaatacttgcaggaccttcatttttaaattggagtactgactgacttgtggcctggagtaagggtgtttcgttatttataata |
1854954 |
T |
|
| Q |
201 |
aaaacccttccaaattttcatggtattttgctaatttaaataaaagttgcattgacttgcaagttgcatggaagacctgaccatatattcttctctct |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1854953 |
aaaacccttccaaattttcatggtattttgctaatttaaataaaagttgcattgacttgcaagttgcatggaagacctgaccatatattcttctctct |
1854856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 1818049 - 1818102
Alignment:
| Q |
15 |
ctccacaagtgtaattgcagccaggtaggacttgtttaggttgatcagatgcaa |
68 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1818049 |
ctccacaggtgtaattgcagcctggtaggacttgtttaggttgatcagatgcaa |
1818102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University