View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16566_low_43 (Length: 295)

Name: NF16566_low_43
Description: NF16566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16566_low_43
NF16566_low_43
[»] chr5 (9 HSPs)
chr5 (18-232)||(3522450-3522664)
chr5 (111-221)||(26449072-26449190)
chr5 (251-295)||(30132890-30132934)
chr5 (248-295)||(20502189-20502236)
chr5 (251-295)||(33247294-33247338)
chr5 (244-277)||(8680661-8680694)
chr5 (251-288)||(30132844-30132881)
chr5 (170-207)||(39466671-39466708)
chr5 (251-295)||(38978844-38978888)
[»] chr8 (11 HSPs)
chr8 (120-227)||(32897622-32897737)
chr8 (251-295)||(35583985-35584029)
chr8 (253-295)||(29690538-29690580)
chr8 (251-295)||(7548499-7548543)
chr8 (251-295)||(13831877-13831921)
chr8 (251-295)||(34745259-34745303)
chr8 (251-295)||(43292570-43292614)
chr8 (251-280)||(34604898-34604927)
chr8 (251-280)||(43932051-43932080)
chr8 (251-280)||(43932166-43932195)
chr8 (251-295)||(45372807-45372851)
[»] chr2 (4 HSPs)
chr2 (169-225)||(29463290-29463346)
chr2 (238-275)||(39063766-39063803)
chr2 (189-221)||(1529388-1529420)
chr2 (120-152)||(13527103-13527135)
[»] chr1 (5 HSPs)
chr1 (170-230)||(42471273-42471333)
chr1 (248-290)||(45977093-45977135)
chr1 (166-210)||(30210222-30210265)
chr1 (189-221)||(47666584-47666616)
chr1 (251-295)||(51590432-51590476)
[»] chr4 (15 HSPs)
chr4 (248-295)||(43141765-43141812)
chr4 (248-295)||(54864166-54864213)
chr4 (251-295)||(33622882-33622926)
chr4 (120-222)||(26619934-26620044)
chr4 (251-295)||(32193477-32193521)
chr4 (251-281)||(29686516-29686546)
chr4 (251-280)||(25756829-25756858)
chr4 (168-221)||(34667161-34667214)
chr4 (251-280)||(36196367-36196396)
chr4 (251-280)||(43556693-43556722)
chr4 (251-288)||(52136701-52136738)
chr4 (252-280)||(4418100-4418128)
chr4 (251-295)||(25874802-25874846)
chr4 (248-280)||(27587245-27587277)
chr4 (255-295)||(50511251-50511291)
[»] scaffold0474 (1 HSPs)
scaffold0474 (170-226)||(11330-11386)
[»] chr7 (8 HSPs)
chr7 (120-166)||(42078145-42078191)
chr7 (248-280)||(24164515-24164547)
chr7 (165-226)||(28109304-28109365)
chr7 (251-280)||(41487908-41487937)
chr7 (251-292)||(47280176-47280217)
chr7 (248-280)||(10674240-10674272)
chr7 (248-280)||(13860334-13860366)
chr7 (248-280)||(41088969-41089001)
[»] chr3 (9 HSPs)
chr3 (253-295)||(43901683-43901725)
chr3 (251-295)||(53703732-53703776)
chr3 (245-280)||(2544433-2544468)
chr3 (111-166)||(40417622-40417677)
chr3 (248-278)||(25294779-25294809)
chr3 (251-280)||(19227425-19227454)
chr3 (251-295)||(31376277-31376321)
chr3 (251-295)||(39617013-39617057)
chr3 (120-156)||(45818038-45818073)
[»] scaffold0767 (1 HSPs)
scaffold0767 (251-295)||(3811-3855)
[»] chr6 (3 HSPs)
chr6 (251-295)||(28605572-28605616)
chr6 (251-280)||(23916244-23916273)
chr6 (245-290)||(30438850-30438895)
[»] scaffold0377 (1 HSPs)
scaffold0377 (111-166)||(11935-11990)
[»] scaffold0200 (1 HSPs)
scaffold0200 (248-290)||(25613-25655)
[»] scaffold0533 (1 HSPs)
scaffold0533 (256-288)||(3349-3381)


Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 18 - 232
Target Start/End: Complemental strand, 3522664 - 3522450
Alignment:
Q  18 gaattttctgttcccaatcaatttcaattggcttttgcacacggtggagatggcagtgttgttaattttttcttatcataataagtgtgtacccaaagac 117  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||| ||    
T  3522664 gaattttctgttcccaatcaatttcaattggctgttgcacacggtggaggtggcagcgttgttaattttttcttatcataataagtgtgtatccaaacac 3522565  T
Q  118 acgataggataaaataatgttatcatctttcttatcatgcatgcaccaataggataaatgtctatcatgttactatcatatcatatctttatctattttc 217  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  3522564 acgataggataaaataatgttatcatcttttttatcatgcgtgcaccaataggataaatgtttatcatgttactatcatattatatctttatctattttc 3522465  T
Q  218 taattatatcatgtc 232  Q
    |||||||||||||||    
T  3522464 taattatatcatgtc 3522450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 111 - 221
Target Start/End: Original strand, 26449072 - 26449190
Alignment:
Q  111 caaagacacgataggataaaataatgttatcatctttcttatcatgcatgcaccaa--------taggataaatgtctatcatgttactatcatatcata 202  Q
    |||| ||| ||||||||||||||||| ||||||||||||||||||   ||||||||        |||||||| |||||||||||| ||||||||||||||    
T  26449072 caaacacatgataggataaaataatgatatcatctttcttatcatatgtgcaccaaaagcatgataggataagtgtctatcatgtcactatcatatcata 26449171  T
Q  203 tctttatctattttctaat 221  Q
    | |||||| ||||||||||    
T  26449172 tttttatccattttctaat 26449190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 30132934 - 30132890
Alignment:
Q  251 tccctccggtccttattataagaaacaattagcttttttgtttca 295  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||    
T  30132934 tccctccggtccttattataagaaacaattaacttttttgattca 30132890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 295
Target Start/End: Complemental strand, 20502236 - 20502189
Alignment:
Q  248 tattccctccggtccttattataagaaacaattagcttttttgtttca 295  Q
    ||||||||||||||||||||||||||||||||||  ||||||| ||||    
T  20502236 tattccctccggtccttattataagaaacaattaatttttttggttca 20502189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 33247294 - 33247338
Alignment:
Q  251 tccctccggtccttattataagaaacaattagcttttttgtttca 295  Q
    ||||||||||||||||||||||| ||||||| |||||||| ||||    
T  33247294 tccctccggtccttattataagagacaattaacttttttggttca 33247338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 277
Target Start/End: Complemental strand, 8680694 - 8680661
Alignment:
Q  244 gtactattccctccggtccttattataagaaaca 277  Q
    |||||| |||||||||||||||||||||||||||    
T  8680694 gtactactccctccggtccttattataagaaaca 8680661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 288
Target Start/End: Original strand, 30132844 - 30132881
Alignment:
Q  251 tccctccggtccttattataagaaacaattagcttttt 288  Q
    ||||||||||||||||||||||||| ||||| ||||||    
T  30132844 tccctccggtccttattataagaaaaaattaacttttt 30132881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 207
Target Start/End: Original strand, 39466671 - 39466708
Alignment:
Q  170 gataaatgtctatcatgttactatcatatcatatcttt 207  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  39466671 gataaatgtatatcctgttactatcatatcatatcttt 39466708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 38978888 - 38978844
Alignment:
Q  251 tccctccggtccttattataagaaacaattagcttttttgtttca 295  Q
    |||||||| ||||||||||||||||||||||  ||||||| ||||    
T  38978888 tccctccgatccttattataagaaacaattaatttttttggttca 38978844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 120 - 227
Target Start/End: Original strand, 32897622 - 32897737
Alignment:
Q  120 gataggataaaataatgttatcatctttcttatcatgcatgcaccaa--------taggataaatgtctatcatgttactatcatatcatatctttatct 211  Q
    |||||||||||| ||||||||| |||||||||||||   ||||||||        ||||||||||||||||||||| |||||| ||||||||||| |||     
T  32897622 gataggataaaaaaatgttatcctctttcttatcatatctgcaccaaacgtatgataggataaatgtctatcatgtcactatcctatcatatcttgatcc 32897721  T
Q  212 attttctaattatatc 227  Q
    |||||||||| |||||    
T  32897722 attttctaatcatatc 32897737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 35584029 - 35583985
Alignment:
Q  251 tccctccggtccttattataagaaacaattagcttttttgtttca 295  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||    
T  35584029 tccctccggtccttattataagaaacaattaacttttttggttca 35583985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 295
Target Start/End: Complemental strand, 29690580 - 29690538
Alignment:
Q  253 cctccggtccttattataagaaacaattagcttttttgtttca 295  Q
    ||||||||||||||||||||||||||||| |||||||| ||||    
T  29690580 cctccggtccttattataagaaacaattaacttttttggttca 29690538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 7548499 - 7548543
Alignment:
Q  251 tccctccggtccttattataagaaacaattagcttttttgtttca 295  Q
    |||||||||||||||||||||||||||||||  ||||||| ||||    
T  7548499 tccctccggtccttattataagaaacaattaatttttttggttca 7548543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 13831877 - 13831921
Alignment:
Q  251 tccctccggtccttattataagaaacaattagcttttttgtttca 295  Q
    ||||| ||||||||||||||||||||||||| |||||||| ||||    
T  13831877 tcccttcggtccttattataagaaacaattaacttttttggttca 13831921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 34745259 - 34745303
Alignment:
Q  251 tccctccggtccttattataagaaacaattagcttttttgtttca 295  Q
    ||||||||||||||||||||||||||||||  |||||||| ||||    
T  34745259 tccctccggtccttattataagaaacaattgacttttttggttca 34745303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 43292570 - 43292614
Alignment:
Q  251 tccctccggtccttattataagaaacaattagcttttttgtttca 295  Q
    ||||||||||||||||||||||||||||||  |||||||| ||||    
T  43292570 tccctccggtccttattataagaaacaattgacttttttggttca 43292614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 280
Target Start/End: Complemental strand, 34604927 - 34604898
Alignment:
Q  251 tccctccggtccttattataagaaacaatt 280  Q
    ||||||||||||||||||||||||||||||    
T  34604927 tccctccggtccttattataagaaacaatt 34604898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 280
Target Start/End: Original strand, 43932051 - 43932080
Alignment:
Q  251 tccctccggtccttattataagaaacaatt 280  Q
    ||||||||||||||||||||||||||||||    
T  43932051 tccctccggtccttattataagaaacaatt 43932080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 280
Target Start/End: Complemental strand, 43932195 - 43932166
Alignment:
Q  251 tccctccggtccttattataagaaacaatt 280  Q
    ||||||||||||||||||||||||||||||    
T  43932195 tccctccggtccttattataagaaacaatt 43932166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 45372851 - 45372807
Alignment:
Q  251 tccctccggtccttattataagaaacaattagcttttttgtttca 295  Q
    |||||||||||||||||||||| |||||||  |||||||| ||||    
T  45372851 tccctccggtccttattataagtaacaattgacttttttgattca 45372807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 29463290 - 29463346
Alignment:
Q  169 ggataaatgtctatcatgttactatcatatcatatctttatctattttctaattata 225  Q
    |||||||||| |||||||| ||||||||||| |||||| ||||||||||||||||||    
T  29463290 ggataaatgtttatcatgtcactatcatatcttatcttcatctattttctaattata 29463346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 275
Target Start/End: Complemental strand, 39063803 - 39063766
Alignment:
Q  238 ctaaatgtactattccctccggtccttattataagaaa 275  Q
    ||||||||| || |||||||||||||||||||||||||    
T  39063803 ctaaatgtagtactccctccggtccttattataagaaa 39063766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 221
Target Start/End: Complemental strand, 1529420 - 1529388
Alignment:
Q  189 actatcatatcatatctttatctattttctaat 221  Q
    |||||||||||||||||||||| ||||||||||    
T  1529420 actatcatatcatatctttatccattttctaat 1529388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 13527135 - 13527103
Alignment:
Q  120 gataggataaaataatgttatcatctttcttat 152  Q
    |||||||||||||||||||||||| ||||||||    
T  13527135 gataggataaaataatgttatcatatttcttat 13527103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 42471333 - 42471273
Alignment:
Q  170 gataaatgtctatcatgttactatcatatcatatctttatctattttctaattatatcatg 230  Q
    |||||||||||||||| | | |||||||||||||||||||||||||||||||  |||||||    
T  42471333 gataaatgtctatcatatcattatcatatcatatctttatctattttctaatcctatcatg 42471273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 290
Target Start/End: Original strand, 45977093 - 45977135
Alignment:
Q  248 tattccctccggtccttattataagaaacaattagcttttttg 290  Q
    |||| ||||||||||||||||||||||||||||| ||||||||    
T  45977093 tattacctccggtccttattataagaaacaattaacttttttg 45977135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 30210222 - 30210265
Alignment:
Q  166 ataggataaatgtctatcatgttactatcatatcatatctttatc 210  Q
    ||||||||||||| |||||||| | ||||||||||||||||||||    
T  30210222 ataggataaatgt-tatcatgtcattatcatatcatatctttatc 30210265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 221
Target Start/End: Complemental strand, 47666616 - 47666584
Alignment:
Q  189 actatcatatcatatctttatctattttctaat 221  Q
    ||||||||||| |||||||||||||||||||||    
T  47666616 actatcatatcctatctttatctattttctaat 47666584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 51590432 - 51590476
Alignment:
Q  251 tccctccggtccttattataagaaacaattagcttttttgtttca 295  Q
    ||||||||||||||||||||| ||||||||  |||||||| ||||    
T  51590432 tccctccggtccttattataaaaaacaattgacttttttggttca 51590476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 248 - 295
Target Start/End: Original strand, 43141765 - 43141812
Alignment:
Q  248 tattccctccggtccttattataagaaacaattagcttttttgtttca 295  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||    
T  43141765 tattccctccggtccttattataagaaacaattaacttttttggttca 43141812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 248 - 295
Target Start/End: Complemental strand, 54864213 - 54864166
Alignment:
Q  248 tattccctccggtccttattataagaaacaattagcttttttgtttca 295  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||    
T  54864213 tattccctccggtccttattataagaaacaattaacttttttggttca 54864166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 33622882 - 33622926
Alignment:
Q  251 tccctccggtccttattataagaaacaattagcttttttgtttca 295  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||    
T  33622882 tccctccggtccttattataagaaacaattaacttttttggttca 33622926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 222
Target Start/End: Complemental strand, 26620044 - 26619934
Alignment:
Q  120 gataggataaaataatgttatcatctttcttatcatgcatgcaccaat--------aggataaatgtctatcatgttactatcatatcatatctttatct 211  Q
    |||| |||||||||||| |||||| ||| |||||||||||||| |||         |||||||||||||||||||||| ||||||||| |||  ||||      
T  26620044 gataagataaaataatgctatcatattttttatcatgcatgcatcaaatgcatgaaaggataaatgtctatcatgttattatcatatcctattcttattc 26619945  T
Q  212 attttctaatt 222  Q
    |||||||||||    
T  26619944 attttctaatt 26619934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 32193477 - 32193521
Alignment:
Q  251 tccctccggtccttattataagaaacaattagcttttttgtttca 295  Q
    ||||||||||||||||||||||||||||||  |||||||| ||||    
T  32193477 tccctccggtccttattataagaaacaattgacttttttggttca 32193521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 281
Target Start/End: Complemental strand, 29686546 - 29686516
Alignment:
Q  251 tccctccggtccttattataagaaacaatta 281  Q
    |||||||||||||||||||||||||||||||    
T  29686546 tccctccggtccttattataagaaacaatta 29686516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 280
Target Start/End: Complemental strand, 25756858 - 25756829
Alignment:
Q  251 tccctccggtccttattataagaaacaatt 280  Q
    ||||||||||||||||||||||||||||||    
T  25756858 tccctccggtccttattataagaaacaatt 25756829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 34667161 - 34667214
Alignment:
Q  168 aggataaatgtctatcatgttactatcatatcatatctttatctattttctaat 221  Q
    ||||||||| | |||||||| ||||||||||| |||||||||| ||||| ||||    
T  34667161 aggataaatatttatcatgtcactatcatatcctatctttatccattttttaat 34667214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 280
Target Start/End: Original strand, 36196367 - 36196396
Alignment:
Q  251 tccctccggtccttattataagaaacaatt 280  Q
    ||||||||||||||||||||||||||||||    
T  36196367 tccctccggtccttattataagaaacaatt 36196396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 280
Target Start/End: Original strand, 43556693 - 43556722
Alignment:
Q  251 tccctccggtccttattataagaaacaatt 280  Q
    ||||||||||||||||||||||||||||||    
T  43556693 tccctccggtccttattataagaaacaatt 43556722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 288
Target Start/End: Original strand, 52136701 - 52136738
Alignment:
Q  251 tccctccggtccttattataagaaacaattagcttttt 288  Q
    ||||||||||||||||||||||||| ||||| ||||||    
T  52136701 tccctccggtccttattataagaaaaaattaacttttt 52136738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 280
Target Start/End: Original strand, 4418100 - 4418128
Alignment:
Q  252 ccctccggtccttattataagaaacaatt 280  Q
    |||||||||||||||||||||||||||||    
T  4418100 ccctccggtccttattataagaaacaatt 4418128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 25874846 - 25874802
Alignment:
Q  251 tccctccggtccttattataagaaacaattagcttttttgtttca 295  Q
    ||||||||||||||||||||||||| |||||  ||||||| ||||    
T  25874846 tccctccggtccttattataagaaagaattaatttttttggttca 25874802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 280
Target Start/End: Original strand, 27587245 - 27587277
Alignment:
Q  248 tattccctccggtccttattataagaaacaatt 280  Q
    |||| ||||||||||||||||||||||||||||    
T  27587245 tatttcctccggtccttattataagaaacaatt 27587277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 295
Target Start/End: Original strand, 50511251 - 50511291
Alignment:
Q  255 tccggtccttattataagaaacaattagcttttttgtttca 295  Q
    ||||||| ||||||||||||||||||| |||||||| ||||    
T  50511251 tccggtctttattataagaaacaattaacttttttggttca 50511291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0474 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0474
Description:

Target: scaffold0474; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 170 - 226
Target Start/End: Original strand, 11330 - 11386
Alignment:
Q  170 gataaatgtctatcatgttactatcatatcatatctttatctattttctaattatat 226  Q
    ||||||||| |||||||| |||||||||  ||||||||||| |||||||||||||||    
T  11330 gataaatgtttatcatgtcactatcatactatatctttatcaattttctaattatat 11386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 166
Target Start/End: Original strand, 42078145 - 42078191
Alignment:
Q  120 gataggataaaataatgttatcatctttcttatcatgcatgcaccaa 166  Q
    |||| ||||||||||||||||||| ||||||||||||| ||||||||    
T  42078145 gatatgataaaataatgttatcatatttcttatcatgcgtgcaccaa 42078191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 280
Target Start/End: Original strand, 24164515 - 24164547
Alignment:
Q  248 tattccctccggtccttattataagaaacaatt 280  Q
    |||||||||||||||||||||||||||||||||    
T  24164515 tattccctccggtccttattataagaaacaatt 24164547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 28109304 - 28109365
Alignment:
Q  165 aataggataaatgtctatcatgttactatcatatcatatctttatctattttctaattatat 226  Q
    |||| ||||||||| ||| | |||||||||||||| |||||||||| | ||||| |||||||    
T  28109304 aatatgataaatgtttattacgttactatcatatcttatctttatccagtttcttattatat 28109365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 280
Target Start/End: Complemental strand, 41487937 - 41487908
Alignment:
Q  251 tccctccggtccttattataagaaacaatt 280  Q
    ||||||||||||||||||||||||||||||    
T  41487937 tccctccggtccttattataagaaacaatt 41487908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Original strand, 47280176 - 47280217
Alignment:
Q  251 tccctccggtccttattataagaaacaattagcttttttgtt 292  Q
    |||||||| || ||||||||||||||||||| ||||||||||    
T  47280176 tccctccgatctttattataagaaacaattaacttttttgtt 47280217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 280
Target Start/End: Complemental strand, 10674272 - 10674240
Alignment:
Q  248 tattccctccggtccttattataagaaacaatt 280  Q
    ||||||||||| |||||||||||||||||||||    
T  10674272 tattccctccgatccttattataagaaacaatt 10674240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 280
Target Start/End: Complemental strand, 13860366 - 13860334
Alignment:
Q  248 tattccctccggtccttattataagaaacaatt 280  Q
    ||||||||||| |||||||||||||||||||||    
T  13860366 tattccctccgatccttattataagaaacaatt 13860334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 280
Target Start/End: Complemental strand, 41089001 - 41088969
Alignment:
Q  248 tattccctccggtccttattataagaaacaatt 280  Q
    |||| ||||||||||||||||||||||||||||    
T  41089001 tattacctccggtccttattataagaaacaatt 41088969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 295
Target Start/End: Complemental strand, 43901725 - 43901683
Alignment:
Q  253 cctccggtccttattataagaaacaattagcttttttgtttca 295  Q
    ||||||||||||||||||||||||||||| |||||||| ||||    
T  43901725 cctccggtccttattataagaaacaattaacttttttggttca 43901683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 53703732 - 53703776
Alignment:
Q  251 tccctccggtccttattataagaaacaattagcttttttgtttca 295  Q
    ||||||||||||||||||||||||||||||  |||||||| ||||    
T  53703732 tccctccggtccttattataagaaacaattgacttttttggttca 53703776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 245 - 280
Target Start/End: Original strand, 2544433 - 2544468
Alignment:
Q  245 tactattccctccggtccttattataagaaacaatt 280  Q
    ||||| ||||||||||||||||||||||||||||||    
T  2544433 tactactccctccggtccttattataagaaacaatt 2544468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 40417622 - 40417677
Alignment:
Q  111 caaagacacgataggataaaataatgttatcatctttcttatcatgcatgcaccaa 166  Q
    |||| ||| |||| |||||||||||| |||||| ||||||||||||| ||||||||    
T  40417622 caaacacatgatatgataaaataatgctatcatatttcttatcatgcgtgcaccaa 40417677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 278
Target Start/End: Original strand, 25294779 - 25294809
Alignment:
Q  248 tattccctccggtccttattataagaaacaa 278  Q
    |||||||||||||||||||||||||||||||    
T  25294779 tattccctccggtccttattataagaaacaa 25294809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 280
Target Start/End: Complemental strand, 19227454 - 19227425
Alignment:
Q  251 tccctccggtccttattataagaaacaatt 280  Q
    ||||||||||||||||||||||||||||||    
T  19227454 tccctccggtccttattataagaaacaatt 19227425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 31376321 - 31376277
Alignment:
Q  251 tccctccggtccttattataagaaacaattagcttttttgtttca 295  Q
    |||||||||||||||||| |||||||||||  |||||||| ||||    
T  31376321 tccctccggtccttattacaagaaacaattgacttttttggttca 31376277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 39617057 - 39617013
Alignment:
Q  251 tccctccggtccttattataagaaacaattagcttttttgtttca 295  Q
    |||||||||||||||||| |||||||||||  |||||||| ||||    
T  39617057 tccctccggtccttattacaagaaacaattgacttttttggttca 39617013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 156
Target Start/End: Complemental strand, 45818073 - 45818038
Alignment:
Q  120 gataggataaaataatgttatcatctttcttatcatg 156  Q
    |||||||||||||||||||||| ||||||||||||||    
T  45818073 gataggataaaataatgttatc-tctttcttatcatg 45818038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0767 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0767
Description:

Target: scaffold0767; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 3811 - 3855
Alignment:
Q  251 tccctccggtccttattataagaaacaattagcttttttgtttca 295  Q
    ||||||||||||||||||||||||||||||  |||||||| ||||    
T  3811 tccctccggtccttattataagaaacaattgacttttttgattca 3855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 28605572 - 28605616
Alignment:
Q  251 tccctccggtccttattataagaaacaattagcttttttgtttca 295  Q
    |||||| |||||||||||||||||||||||| |||||||| ||||    
T  28605572 tccctctggtccttattataagaaacaattaacttttttggttca 28605616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 280
Target Start/End: Complemental strand, 23916273 - 23916244
Alignment:
Q  251 tccctccggtccttattataagaaacaatt 280  Q
    ||||||||||||||||||||||||||||||    
T  23916273 tccctccggtccttattataagaaacaatt 23916244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 30438895 - 30438850
Alignment:
Q  245 tactattccctccggtccttattataagaaacaattagcttttttg 290  Q
    ||||| |||||||| |||||||||||||||| ||||| ||||||||    
T  30438895 tactactccctccgatccttattataagaaataattaacttttttg 30438850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0377 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0377
Description:

Target: scaffold0377; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 11935 - 11990
Alignment:
Q  111 caaagacacgataggataaaataatgttatcatctttcttatcatgcatgcaccaa 166  Q
    |||| ||| |||| ||||||||||||||||||| |||| |||||||| ||||||||    
T  11935 caaaaacatgatatgataaaataatgttatcatatttcctatcatgcgtgcaccaa 11990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 290
Target Start/End: Original strand, 25613 - 25655
Alignment:
Q  248 tattccctccggtccttattataagaaacaattagcttttttg 290  Q
    |||| ||||||||||||||||||| ||||||||| ||||||||    
T  25613 tatttcctccggtccttattataaaaaacaattaacttttttg 25655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0533 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 288
Target Start/End: Complemental strand, 3381 - 3349
Alignment:
Q  256 ccggtccttattataagaaacaattagcttttt 288  Q
    |||||||||||||||||||||||||| ||||||    
T  3381 ccggtccttattataagaaacaattaacttttt 3349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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