View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16566_low_47 (Length: 281)
Name: NF16566_low_47
Description: NF16566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16566_low_47 |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 11 - 175
Target Start/End: Complemental strand, 14757743 - 14757579
Alignment:
| Q |
11 |
ccaagaatattcaagcaaatcacgttcatcggctttccggaacacatctccttctcccaagctaaacaagccctaacattctcttgcttcgcaaaagaat |
110 |
Q |
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| T |
14757743 |
ccaataatattcaagcaaatcatgttcgtcggctttccggaacacatctccttctcccaagctaaacaagccctaacattctcttgcttcgcaaaagaat |
14757644 |
T |
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| Q |
111 |
cagtccagcaatactctttcatcattcttgaagttggatgaggcataataccacaacctacccca |
175 |
Q |
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| T |
14757643 |
cagtccagcaatactctttcatcattcttgaagttggatgaggcataataccacaacctacccca |
14757579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 174 - 281
Target Start/End: Complemental strand, 14757520 - 14757413
Alignment:
| Q |
174 |
caagttgttgcatactgtattcatttatcttcaaactcacccgatccatatcgacatcgttaagattcctccaagcaacatcagtgacagacatgttatc |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14757520 |
caagttgttgcatactgtattcatttatcttcaaactcacccgatccatatcgacatcgttaagattcctccaagcaacatcagtgacagacatgttatc |
14757421 |
T |
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| Q |
274 |
agcattta |
281 |
Q |
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| T |
14757420 |
agcattta |
14757413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 19 - 175
Target Start/End: Complemental strand, 3613912 - 3613756
Alignment:
| Q |
19 |
attcaagcaaatcacgttcatcggctttccggaacacatctccttctcccaagctaaacaagccctaacattctcttgcttcgcaaaagaatcagtccag |
118 |
Q |
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| T |
3613912 |
attcaagcaaatcacgttcatcggttttccagaacatgtctctttctcccaagctaaacaagccctaacattctcttgatttgcaaaagaatccgtccaa |
3613813 |
T |
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| Q |
119 |
caatactctttcatcattcttgaagttggatgaggcataataccacaacctacccca |
175 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3613812 |
caatactctttcaaggttcttgaagttggatgaggcataataccagaacctacccca |
3613756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 174 - 279
Target Start/End: Complemental strand, 3613697 - 3613592
Alignment:
| Q |
174 |
caagttgttgcatactgtattcatttatcttcaaactcacccgatccatatcgacatcgttaagattcctccaagcaacatcagtgacagacatgttatc |
273 |
Q |
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||||||||||||||||||||||||||||||||||| ||| ||||| || |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3613697 |
caagttgttgcatactgtattcatttatcttcaaattcaaccgattactagcgacatcgttgagattcctccaagcaacatcagtgacagacatgttatc |
3613598 |
T |
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| Q |
274 |
agcatt |
279 |
Q |
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|||||| |
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| T |
3613597 |
agcatt |
3613592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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