View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16566_low_48 (Length: 269)
Name: NF16566_low_48
Description: NF16566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16566_low_48 |
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Alignment Details
Target: chr7 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 46524016 - 46524188
Alignment:
| Q |
18 |
ctattaaacaatctcacaaaccataaatcctctcaaataaatctatccaaacaggcgtttagtaatccactaatcctacatcagtatcatgtcaataacc |
117 |
Q |
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| T |
46524016 |
ctattaaacaatctcacaaaccataaatcctctcaaataaatctatccaaacaggcgtttagtaatccactaatcctacatcagtatcatgtcaataacc |
46524115 |
T |
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| Q |
118 |
cacatacaaaaccactcaaactaaactgataagtgtaatccccgaattaagttattaagtattactctctcct |
190 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46524116 |
cacataaaaaaccactcaaactaaactgataagtgtaatccccgaattaagttattaagtattactctctcct |
46524188 |
T |
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Target: chr7; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 46531599 - 46531719
Alignment:
| Q |
18 |
ctattaaacaatctcacaaaccataaatcctctcaaataaatctatccaaacaggcgtttagtaatccactaatcctacatcagtatcatgtcaataacc |
117 |
Q |
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|||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
46531599 |
ctattaaacaatctcacaaaccgtaaatcctctcaattaaatctatcccaacaggcgtttagtaatccactgatcctacatcagtatcatgtcaatagcc |
46531698 |
T |
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| Q |
118 |
cacatacaaaaccactcaaac |
138 |
Q |
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||||| || ||||||||||| |
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| T |
46531699 |
cacatcaaacaccactcaaac |
46531719 |
T |
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