View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16566_low_49 (Length: 268)

Name: NF16566_low_49
Description: NF16566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16566_low_49
NF16566_low_49
[»] chr3 (2 HSPs)
chr3 (57-249)||(31769615-31769807)
chr3 (1-55)||(31769870-31769924)
[»] scaffold0246 (1 HSPs)
scaffold0246 (78-244)||(22123-22290)
[»] chr4 (4 HSPs)
chr4 (78-244)||(40484184-40484351)
chr4 (105-148)||(19120126-19120169)
chr4 (96-151)||(41879085-41879140)
chr4 (96-148)||(42272978-42273030)
[»] chr6 (4 HSPs)
chr6 (1-53)||(27317279-27317331)
chr6 (96-165)||(31706771-31706840)
chr6 (11-53)||(27580891-27580933)
chr6 (104-148)||(14844185-14844229)
[»] scaffold0555 (1 HSPs)
scaffold0555 (104-151)||(7716-7763)
[»] chr5 (2 HSPs)
chr5 (99-150)||(42259323-42259374)
chr5 (104-148)||(476261-476305)
[»] chr2 (2 HSPs)
chr2 (116-151)||(18634962-18634997)
chr2 (105-151)||(11579585-11579631)
[»] chr1 (2 HSPs)
chr1 (105-151)||(28357940-28357986)
chr1 (104-148)||(3545149-3545193)
[»] chr8 (1 HSPs)
chr8 (116-148)||(42579494-42579526)


Alignment Details
Target: chr3 (Bit Score: 161; Significance: 6e-86; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 57 - 249
Target Start/End: Complemental strand, 31769807 - 31769615
Alignment:
Q  57 gtcgcgcctatggaggttacgtctggtcggcaacctctcttcagcagacgccaagctacaatggacaccttcataggaacctgcttatgccaaactagtt 156  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  31769807 gtcgcgcctatggaggttacgtctggtcggcaacctgtcttcagcaaacgccaagctacaatggacaccttcataggaaactgcttatgccaaactagtt 31769708  T
Q  157 ctctagttgcatctattgttgaggaaactgaagctgtcagaatctgataagtgtctcgcacagtgtaaccatcatgaatatctggatctcatt 249  Q
    |||||||||||||||||||||||||||  | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  31769707 ctctagttgcatctattgttgaggaaatcggagctgtcagaatctgataagtgcctcgcacagtgtaaccatcatgaatatctggatcccatt 31769615  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 31769924 - 31769870
Alignment:
Q  1 ccaagaccgaatatgctgccatagcgacccgaaaacatcacaatggagaaacaga 55  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  31769924 ccaagaccggatatgctgccatagcgacccgaaaacatcacaatggagaaacaga 31769870  T

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Target: scaffold0246 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 78 - 244
Target Start/End: Original strand, 22123 - 22290
Alignment:
Q  78 tctggtcggcaacctctctt-cagcagacgccaagctacaatggacaccttcataggaacctgcttatgccaaactagttctctagttgcatctattgtt 176  Q
    ||||||||| ||||| |||| ||||||||| |||||||||||  ||||||| | |||| ||||||||||||| || || ||||| ||||| ||  ||||     
T  22123 tctggtcggtaacctgtctttcagcagacgtcaagctacaataaacaccttgagaggagcctgcttatgccatacaaggtctcttgttgcttcagttgtg 22222  T
Q  177 gaggaaactgaagctgtcagaatctgataagtgtctcgcacagtgtaaccatcatgaatatctggatc 244  Q
    || || ||   || ||||||||||||||| |   |||| ||||||||||| |||||||||||||||||    
T  22223 gaagagacctgagttgtcagaatctgatatgcacctcggacagtgtaaccttcatgaatatctggatc 22290  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 78 - 244
Target Start/End: Original strand, 40484184 - 40484351
Alignment:
Q  78 tctggtcggcaacctctctt-cagcagacgccaagctacaatggacaccttcataggaacctgcttatgccaaactagttctctagttgcatctattgtt 176  Q
    ||||||||| ||||| |||| ||||||||| |||||||||||  ||||||| | |||| ||||||||||||| || || ||||| ||||| ||  ||||     
T  40484184 tctggtcggtaacctgtctttcagcagacgtcaagctacaataaacaccttgagaggagcctgcttatgccatacaaggtctcttgttgcttcagttgtg 40484283  T
Q  177 gaggaaactgaagctgtcagaatctgataagtgtctcgcacagtgtaaccatcatgaatatctggatc 244  Q
    || || ||   || ||||||||||||||| |   |||| ||||||||||| |||||||||||||||||    
T  40484284 gaagagacctgagttgtcagaatctgatatgcacctcggacagtgtaaccttcatgaatatctggatc 40484351  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 105 - 148
Target Start/End: Original strand, 19120126 - 19120169
Alignment:
Q  105 cgccaagctacaatggacaccttcataggaacctgcttatgcca 148  Q
    |||||||| | |||||| ||||||||||||||||||||||||||    
T  19120126 cgccaagcaaaaatggaaaccttcataggaacctgcttatgcca 19120169  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 96 - 151
Target Start/End: Complemental strand, 41879140 - 41879085
Alignment:
Q  96 ttcagcagacgccaagctacaatggacaccttcataggaacctgcttatgccaaac 151  Q
    |||||||||||||| || || || |||||||||| ||| |||||||||||||||||    
T  41879140 ttcagcagacgccacgcgaccatagacaccttcaaagggacctgcttatgccaaac 41879085  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 148
Target Start/End: Original strand, 42272978 - 42273030
Alignment:
Q  96 ttcagcagacgccaagctacaatggacaccttcataggaacctgcttatgcca 148  Q
    ||||||| || |||||||||||| |||||||| |  |||||||||||||||||    
T  42272978 ttcagcaaactccaagctacaatagacaccttgaggggaacctgcttatgcca 42273030  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 27317279 - 27317331
Alignment:
Q  1 ccaagaccgaatatgctgccatagcgacccgaaaacatcacaatggagaaaca 53  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  27317279 ccaagaccggatatgctgccatagcgactcgaaaacatcacaatggagaaaca 27317331  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 31706771 - 31706840
Alignment:
Q  96 ttcagcagacgccaagctacaatggacaccttcataggaacctgcttatgccaaactagttctctagttg 165  Q
    ||||||| ||||| |||||||||||||||||||| |||||||||||||||||| || || ||||| ||||    
T  31706771 ttcagcatacgccgagctacaatggacaccttcagaggaacctgcttatgccatacaaggtctcttgttg 31706840  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 27580891 - 27580933
Alignment:
Q  11 atatgctgccatagcgacccgaaaacatcacaatggagaaaca 53  Q
    ||||||||||||| ||||| |||||||||||||||||||||||    
T  27580891 atatgctgccataacgacctgaaaacatcacaatggagaaaca 27580933  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 14844229 - 14844185
Alignment:
Q  104 acgccaagctacaatggacaccttcataggaacctgcttatgcca 148  Q
    ||||||||| | |||||| ||||||| ||||||||||||||||||    
T  14844229 acgccaagccagaatggaaaccttcaaaggaacctgcttatgcca 14844185  T

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Target: scaffold0555 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 151
Target Start/End: Original strand, 7716 - 7763
Alignment:
Q  104 acgccaagctacaatggacaccttcataggaacctgcttatgccaaac 151  Q
    ||||||||| | |||||| ||||||| |||||||||||||||||||||    
T  7716 acgccaagccataatggaaaccttcaaaggaacctgcttatgccaaac 7763  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 150
Target Start/End: Original strand, 42259323 - 42259374
Alignment:
Q  99 agcagacgccaagctacaatggacaccttcataggaacctgcttatgccaaa 150  Q
    |||||||||||||| |||||| | ||||| | ||||||||||||||||||||    
T  42259323 agcagacgccaagcaacaatgaaaacctttagaggaacctgcttatgccaaa 42259374  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 476261 - 476305
Alignment:
Q  104 acgccaagctacaatggacaccttcataggaacctgcttatgcca 148  Q
    ||||||||| | |||||| ||||||| ||||||||||||||||||    
T  476261 acgccaagccaaaatggaaaccttcaaaggaacctgcttatgcca 476305  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 151
Target Start/End: Original strand, 18634962 - 18634997
Alignment:
Q  116 aatggacaccttcataggaacctgcttatgccaaac 151  Q
    |||||| |||||||||||||||||||||||||||||    
T  18634962 aatggaaaccttcataggaacctgcttatgccaaac 18634997  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 151
Target Start/End: Complemental strand, 11579631 - 11579585
Alignment:
Q  105 cgccaagctacaatggacaccttcataggaacctgcttatgccaaac 151  Q
    |||||||| | ||||||||||||||| ||||| ||||||||||||||    
T  11579631 cgccaagcaagaatggacaccttcattggaacatgcttatgccaaac 11579585  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 28357940 - 28357986
Alignment:
Q  105 cgccaagctacaatggacaccttcataggaacctgcttatgccaaac 151  Q
    |||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  28357940 cgccaagcaacaatggaaaccttcaaagggacctgcttatgccaaac 28357986  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 3545193 - 3545149
Alignment:
Q  104 acgccaagctacaatggacaccttcataggaacctgcttatgcca 148  Q
    ||||||||| | |||||| ||||||| ||||||||||||||||||    
T  3545193 acgccaagccagaatggaaaccttcaaaggaacctgcttatgcca 3545149  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 148
Target Start/End: Complemental strand, 42579526 - 42579494
Alignment:
Q  116 aatggacaccttcataggaacctgcttatgcca 148  Q
    ||||||||||||||| |||||||||||||||||    
T  42579526 aatggacaccttcattggaacctgcttatgcca 42579494  T

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