View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16566_low_5 (Length: 608)
Name: NF16566_low_5
Description: NF16566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16566_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 95; Significance: 4e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 354 - 468
Target Start/End: Complemental strand, 10311999 - 10311885
Alignment:
| Q |
354 |
agagatatgaggaagaaggtggatgagcgaatcagaactctcattgaaaatggtgtcaaaacaaggcatatgtccatgtttgtcatcattggtgacaagt |
453 |
Q |
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| T |
10311999 |
agagatatgaggaagaaggtggatgagcgaatcagaactctcattgagaatggcgttaaaacaaggcataggtccatgtttgtcatcattggtgacaagt |
10311900 |
T |
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| Q |
454 |
accatgaccaggtat |
468 |
Q |
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| T |
10311899 |
actatgaccaggtat |
10311885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 360 - 469
Target Start/End: Complemental strand, 38436333 - 38436224
Alignment:
| Q |
360 |
atgaggaagaaggtggatgagcgaatcagaactctcattgaaaatggtgtcaaaacaaggcatatgtccatgtttgtcatcattggtgacaagtaccatg |
459 |
Q |
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|||||||||||||||||||| || ||||||||||| || |||||||| |||||| |||||||| |||||||||||||| || |||||||| | || || |
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| T |
38436333 |
atgaggaagaaggtggatgaacgtatcagaactcttatcgaaaatggcgtcaaatcaaggcatcgatccatgtttgtcattatcggtgacaaatcccgtg |
38436234 |
T |
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| Q |
460 |
accaggtatc |
469 |
Q |
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| T |
38436233 |
atcaggtatc |
38436224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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