View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16566_low_50 (Length: 262)
Name: NF16566_low_50
Description: NF16566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16566_low_50 |
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Alignment Details
Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 6700596 - 6700503
Alignment:
| Q |
25 |
agtagcaactcccaaacacataagaggattagaccaccatatctaaaatttctaaattaaaaagtggtgttgtaacgcactatacgaagttgta |
118 |
Q |
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| T |
6700596 |
agtagcaactcccaagtacataagaggattaggccatcatatctaaaatttctaaattaaaaagtggtgttgtaacgccctatacgaagttgta |
6700503 |
T |
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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 224 - 262
Target Start/End: Complemental strand, 6700417 - 6700379
Alignment:
| Q |
224 |
catatatgttgatcatatcacatcgtatgacttatcgtt |
262 |
Q |
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| T |
6700417 |
catatatgttgatcatatcacatcgtatgactcatcgtt |
6700379 |
T |
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