View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16566_low_51 (Length: 262)
Name: NF16566_low_51
Description: NF16566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16566_low_51 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 20 - 253
Target Start/End: Complemental strand, 53554262 - 53554028
Alignment:
| Q |
20 |
aatataacatgaagataacattccaaattttaagttattttgaggaaaaaattgtctcaaattataacttatttaacannnnnnn-aagggataagtcat |
118 |
Q |
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| T |
53554262 |
aatataacatgaagataacattccaaattttaagttattttgaggaaaaaattgtctcaaattataacttattttacattttttttaagggataagtcat |
53554163 |
T |
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| Q |
119 |
tttaaatggtatgacaaaaattacttgatatctgcttttggtacacacatgattaattaaattttatgtatgtggtgatcaattcgagcaaggatagcat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53554162 |
tttaaatggtatgacaaaaattacttgatatctgcttttggtacacacatgattaattaaattttatgtatgtggtgatcaattcgagcaaggatagcat |
53554063 |
T |
|
| Q |
219 |
tcctatcataacacctgtaattcacttagtataat |
253 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
53554062 |
tcctatcataacacctgtaattcacttagtataat |
53554028 |
T |
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