View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16566_low_52 (Length: 260)
Name: NF16566_low_52
Description: NF16566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16566_low_52 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 37797033 - 37797259
Alignment:
| Q |
19 |
ataatgctattacaattttggagatgaatttaccaattctcaaagtaacatgagactcgtgctttagattaactaggcaaaatttggttttccttttttc |
118 |
Q |
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| T |
37797033 |
ataatgctattacaattttggagatgaatttaccaattctcaaagtaacatgagactcgtgctttagattaactaggcaaaatttggttttccttttttc |
37797132 |
T |
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| Q |
119 |
ttgtatgcaggaggaaaagaccaaagattacttggaaggtgctttttatggcattcctatctgggttgtttgggtatatgctacttttctttttcttttc |
218 |
Q |
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| T |
37797133 |
ttgtatgcaggaggaaaagaccaaagattacttggaaggtgctttttatggcattcctatctgggttgtttgggtatatgctacttttctttttcttttc |
37797232 |
T |
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| Q |
219 |
ctgcatcaatattgtctggcgcctatg |
245 |
Q |
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| T |
37797233 |
ctgcatcaatattgtctggcgcctatg |
37797259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 64 - 195
Target Start/End: Original strand, 37788850 - 37788980
Alignment:
| Q |
64 |
taacatgagactcgtgctttagattaactaggcaaaatttggttttccttttttcttgtatgcaggaggaaaagaccaaagattacttggaaggtgcttt |
163 |
Q |
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| T |
37788850 |
taacatgaga-tcgtgcagtagattaactaggccaaattcgtttttttttctttctgttatgcaggaaggaaagaccaaagattactcggaatgtgcttt |
37788948 |
T |
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| Q |
164 |
ttatggcattcctatctgggttgtttgggtat |
195 |
Q |
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| T |
37788949 |
ctctggcatttctatgcggattgtttgggtat |
37788980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 194
Target Start/End: Original strand, 37807340 - 37807398
Alignment:
| Q |
136 |
agaccaaagattacttggaaggtgctttttatggcattcctatctgggttgtttgggta |
194 |
Q |
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| T |
37807340 |
agaccaaagattacttggaaggttctttttctttcatttctatgtggattgtttgggta |
37807398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 195
Target Start/End: Original strand, 37780608 - 37780665
Alignment:
| Q |
138 |
accaaagattacttggaaggtgctttttatggcattcctatctgggttgtttgggtat |
195 |
Q |
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||||||||||||||||||||| |||| |||| |||| || | ||| |||||||||||| |
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| T |
37780608 |
accaaagattacttggaaggttctttatatgacatttctttgtggattgtttgggtat |
37780665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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