View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16566_low_56 (Length: 224)
Name: NF16566_low_56
Description: NF16566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16566_low_56 |
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| [»] scaffold0341 (2 HSPs) |
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Alignment Details
Target: scaffold0341 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 12241 - 12453
Alignment:
| Q |
1 |
cactacaaaacaatatgggagttaagctaaattaagcaaaatattttcacttatcttcaactttctactaacttgcataaactaatttaaaaacaaccaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12241 |
cactacaaaacaatatgggagttaagctaaattaagcaaaatattttcacttatcttcaactttctactaacttgcataaactaatttaaaaacaaccaa |
12340 |
T |
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| Q |
101 |
tactannnnnnnaacacttactaagttcccacaattctatttgtgttttcctgggtttggtcaacaccaaaaagccttgccatgccaaaatcagctatct |
200 |
Q |
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||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
12341 |
tactatttttttaatacttactaagttcccacaattctatttgtgttttcctgggtttggtcaatactaaaaagccttgccatgccaaaatcagctatct |
12440 |
T |
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| Q |
201 |
taggattcatctc |
213 |
Q |
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||||||||||||| |
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| T |
12441 |
taggattcatctc |
12453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 117 - 210
Target Start/End: Original strand, 4737 - 4829
Alignment:
| Q |
117 |
cttactaagttcccacaattctatttgtgttttcctgggtttggtcaacaccaaaaagccttgccatgccaaaatcagctatcttaggattcat |
210 |
Q |
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| T |
4737 |
cttactaagttcccacaattctatttgtgttt-cctgggtttggtcaacaccaaaaagtcttgccatgccaaaatcagctatcttaggattcat |
4829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 6510561 - 6510773
Alignment:
| Q |
1 |
cactacaaaacaatatgggagttaagctaaattaagcaaaatattttcacttatcttcaactttctactaacttgcataaactaatttaaaaacaaccaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6510561 |
cactacaaaacaatatgggagttaagctaaattaagcaaaatattttcacttatcttcaactttctactaacttgcataaactaatttaaaaacaaccaa |
6510660 |
T |
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| Q |
101 |
tactannnnnnnaacacttactaagttcccacaattctatttgtgttttcctgggtttggtcaacaccaaaaagccttgccatgccaaaatcagctatct |
200 |
Q |
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||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
6510661 |
tactatttttttaatacttactaagttcccacaattctatttgtgttttcctgggtttggtcaatactaaaaagccttgccatgccaaaatcagctatct |
6510760 |
T |
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| Q |
201 |
taggattcatctc |
213 |
Q |
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||||||||||||| |
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| T |
6510761 |
taggattcatctc |
6510773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 117 - 210
Target Start/End: Original strand, 6503057 - 6503150
Alignment:
| Q |
117 |
cttactaagttcccacaattctatttgtgttttcctgggtttggtcaacaccaaaaagccttgccatgccaaaatcagctatcttaggattcat |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
6503057 |
cttactaagttcccacaattctatttgtgttttcctgggtttggtcaacaccaaaaagtcttgccatgccaaaatcagctatcttaggattcat |
6503150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 116 - 211
Target Start/End: Original strand, 6515066 - 6515161
Alignment:
| Q |
116 |
acttactaagttcccacaattctatttgtgttttcctgggtttggtcaacaccaaaaagccttgccatgccaaaatcagctatcttaggattcatc |
211 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
6515066 |
acttactaggttcccacaattctatttgtgttttcctgggtttggtccacaccaaaaagtcttgccatgccaaaatcagctatcttaggattcatc |
6515161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 116 - 210
Target Start/End: Original strand, 6497722 - 6497816
Alignment:
| Q |
116 |
acttactaagttcccacaattctatttgtgttttcctgggtttggtcaacaccaaaaagccttgccatgccaaaatcagctatcttaggattcat |
210 |
Q |
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|||||||| |||||||||||||| |||||||||||||| |||||||| |||||||| || ||||||||||||||||||| ||||||||||||||| |
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| T |
6497722 |
acttactaggttcccacaattctttttgtgttttcctgtgtttggtccacaccaaatagtcttgccatgccaaaatcagatatcttaggattcat |
6497816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 116 - 213
Target Start/End: Complemental strand, 6525438 - 6525341
Alignment:
| Q |
116 |
acttactaagttcccacaattctatttgtgttttcctgggtttggtcaacaccaaaaagccttgccatgccaaaatcagctatcttaggattcatctc |
213 |
Q |
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|||||||| |||||||||||||| ||||| |||||||| |||||||| ||| |||| || || |||||||||||||| |||||||||||||||||||| |
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| T |
6525438 |
acttactaggttcccacaattctgtttgtattttcctgagtttggtccacatcaaacagtctagccatgccaaaatctgctatcttaggattcatctc |
6525341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 6514960 - 6515039
Alignment:
| Q |
1 |
cactacaaaacaatatggg-agttaagctaaattaagcaaaatattttcacttatcttcaactttctactaacttgcata |
79 |
Q |
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||||||| |||||||||| |||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6514960 |
cactacataacaatatggatagttcagctaaattaagaaaaatatttttacttatcttcaactttctactaacttgcata |
6515039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 210
Target Start/End: Original strand, 28828947 - 28829041
Alignment:
| Q |
116 |
acttactaagttcccacaattctatttgtgttttcctgggtttggtcaacaccaaaaagccttgccatgccaaaatcagctatcttaggattcat |
210 |
Q |
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|||||||| ||||| ||||||||| |||| ||| | || ||||| || ||| || || ||||||||||||||||| |||||||||| |||||| |
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| T |
28828947 |
acttactaggttccaacaattctacttgtatttgcttgtgtttgatccacaagaattagtcttgccatgccaaaatctgctatcttagcattcat |
28829041 |
T |
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