View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16566_low_6 (Length: 598)
Name: NF16566_low_6
Description: NF16566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16566_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 57 - 587
Target Start/End: Complemental strand, 39447548 - 39447018
Alignment:
| Q |
57 |
acaagccttaaggacacgaacctccaagtgaacattcgaatgtgccggaacaagatggacataaaggttattgctgctttttctcatatttcagttagct |
156 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39447548 |
acaagccttaaggacacgaacctccaagtgaacattcgaatgtgccggaacaagatggacataaaggttattgctgctttttctcatatttcagttagct |
39447449 |
T |
|
| Q |
157 |
ttatccattatcttattaatatttgatcttaatatttacaattaatattaagagctacttgtttcttaaccacttgagttattgtcaatttgtgaactat |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39447448 |
ttatccattatcttattaatatttgatcttaatatttacaattaatattaagagctacttgtttcttaaccacttgagttattgtcaatttgtgaactat |
39447349 |
T |
|
| Q |
257 |
cctttatgtttctgtatcatgtaatatctaagacacatggctattacatgcataagttcttgctgtcacatttttatatattccttcgtaacatgaatat |
356 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39447348 |
ccttcatgtttctgtatcatgtaatatctaagacacatggctattacatgcataagttcttgctgtcacatttttatatattccttcgtaacatgaatat |
39447249 |
T |
|
| Q |
357 |
atgattatacttactagctcctctcttcaaatatgttttctagatgtgatggttaaccaataattannnnnnnncgtagcatttatcttcataaacaagt |
456 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
39447248 |
atgattatacttactagctcctctcttcaaatatgttttctagatgtgatggttaaccaataattattttttttcatagcatttatcttcataaacaagt |
39447149 |
T |
|
| Q |
457 |
gtctttatgcatttatgcggtatacaggttttgctattgaagacatgggaagaaagtgagaagtccaaagtagagaataagaagtgaaggtgtgggaagg |
556 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39447148 |
gtctttatgcatttatgcggtatacaggttttgctattgaagacatgggaagaaagtgagaagtccaaagtagagaataagaagtgaaggtgtgggaagg |
39447049 |
T |
|
| Q |
557 |
catgtgttttcatgactgcagtgatgatgtc |
587 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
39447048 |
catgtgttttcatgactgcagtgatgatgtc |
39447018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 328 - 499
Target Start/End: Original strand, 27283127 - 27283304
Alignment:
| Q |
328 |
ttttatatattccttcgtaacatgaatatatgattatactta----ctagctcctctcttcaaatatgttttctagatgtgatggttaaccaataattan |
423 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||||||| ||||||| ||| |||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
27283127 |
ttttatatattccttggtaacatgaatatatgtttatacttaattactagctcatctattcaaatatgttttctagatatgatggttacccaataatt-- |
27283224 |
T |
|
| Q |
424 |
nnnnnnncgtagcatttatcttcataaacaag----tgtctttatgcatttatgcggtatacaggttttgctattgaaga |
499 |
Q |
| |
|
| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
27283225 |
tttttgtcatagcatttatcttcataaacaagcttcgttctttatgcatttatgtggtatacaggttttgctattgaaga |
27283304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 239 - 327
Target Start/End: Original strand, 9761669 - 9761757
Alignment:
| Q |
239 |
tgtcaatttgtgaactatcctttatgtttctgtatcatgtaatatctaagacacatggctattacatgcataagttcttgctgtcacat |
327 |
Q |
| |
|
||||| |||||||||||||||| |||||||| ||||| |||||||||||||||||||| | |||||| || ||||||| ||||||| |
|
|
| T |
9761669 |
tgtcactttgtgaactatccttcatgtttctacatcatctaatatctaagacacatggccaatacatggatcgattcttgccgtcacat |
9761757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 546
Target Start/End: Original strand, 9774708 - 9774761
Alignment:
| Q |
494 |
tgaagacatgggaagaaagtgagaagtccaaagtagagaataa-gaagtgaagg |
546 |
Q |
| |
|
|||| |||||||||||||||||||| || | |||||||||||| |||||||||| |
|
|
| T |
9774708 |
tgaatacatgggaagaaagtgagaactctagagtagagaataaggaagtgaagg |
9774761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University