View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16566_low_9 (Length: 539)

Name: NF16566_low_9
Description: NF16566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16566_low_9
NF16566_low_9
[»] chr7 (12 HSPs)
chr7 (18-538)||(33738025-33738545)
chr7 (335-414)||(36870340-36870419)
chr7 (335-449)||(36651146-36651260)
chr7 (335-449)||(39907395-39907509)
chr7 (335-449)||(46356867-46356981)
chr7 (334-415)||(22346698-22346779)
chr7 (335-440)||(32629769-32629874)
chr7 (361-419)||(32483655-32483713)
chr7 (335-435)||(33350822-33350922)
chr7 (335-432)||(38896786-38896883)
chr7 (380-449)||(38606191-38606260)
chr7 (377-418)||(17101541-17101582)
[»] chr2 (8 HSPs)
chr2 (335-449)||(452632-452746)
chr2 (335-418)||(14769483-14769566)
chr2 (335-415)||(2609714-2609794)
chr2 (374-496)||(8179899-8180020)
chr2 (338-427)||(6464935-6465024)
chr2 (337-449)||(24584624-24584736)
chr2 (156-193)||(13148729-13148766)
chr2 (337-411)||(39287849-39287923)
[»] chr1 (9 HSPs)
chr1 (302-440)||(51441747-51441885)
chr1 (335-449)||(8671070-8671184)
chr1 (336-449)||(29173546-29173659)
chr1 (333-449)||(43241395-43241511)
chr1 (374-512)||(49348457-49348594)
chr1 (302-414)||(32405447-32405558)
chr1 (160-214)||(37463704-37463758)
chr1 (336-413)||(34828102-34828179)
chr1 (156-200)||(46227142-46227186)
[»] chr8 (5 HSPs)
chr8 (335-440)||(36566257-36566362)
chr8 (335-411)||(42855029-42855105)
chr8 (377-440)||(6184821-6184884)
chr8 (335-449)||(36544304-36544417)
chr8 (337-417)||(15216289-15216369)
[»] chr3 (5 HSPs)
chr3 (335-440)||(51448725-51448830)
chr3 (335-449)||(52137980-52138094)
chr3 (368-419)||(50630368-50630419)
chr3 (333-441)||(9258047-9258155)
chr3 (377-411)||(48220971-48221005)
[»] chr4 (16 HSPs)
chr4 (377-449)||(39707616-39707688)
chr4 (335-449)||(23907318-23907432)
chr4 (335-496)||(435338-435498)
chr4 (374-482)||(1778072-1778179)
chr4 (264-418)||(55769327-55769481)
chr4 (264-418)||(55833583-55833737)
chr4 (335-440)||(48623543-48623648)
chr4 (374-416)||(33369027-33369069)
chr4 (335-415)||(16002194-16002273)
chr4 (377-437)||(41598154-41598214)
chr4 (377-411)||(2296364-2296398)
chr4 (382-436)||(29822316-29822370)
chr4 (337-434)||(27451191-27451288)
chr4 (155-216)||(44860493-44860552)
chr4 (377-449)||(6937131-6937203)
chr4 (335-411)||(53703800-53703876)
[»] chr5 (6 HSPs)
chr5 (335-434)||(24177691-24177790)
chr5 (335-433)||(2076490-2076588)
chr5 (335-449)||(20318143-20318257)
chr5 (377-415)||(27144-27182)
chr5 (377-417)||(35685042-35685082)
chr5 (377-417)||(37123755-37123795)
[»] scaffold0018 (1 HSPs)
scaffold0018 (335-435)||(30634-30734)
[»] chr6 (7 HSPs)
chr6 (335-433)||(9705943-9706041)
chr6 (335-449)||(20428653-20428767)
chr6 (156-214)||(2208240-2208298)
chr6 (335-449)||(6082552-6082666)
chr6 (335-434)||(5260264-5260363)
chr6 (377-449)||(30670046-30670118)
chr6 (377-425)||(2681494-2681542)
[»] scaffold0286 (1 HSPs)
scaffold0286 (156-214)||(339-397)
[»] scaffold0113 (1 HSPs)
scaffold0113 (336-415)||(13275-13354)
[»] scaffold0045 (1 HSPs)
scaffold0045 (377-415)||(90148-90186)
[»] scaffold0220 (1 HSPs)
scaffold0220 (381-449)||(25271-25339)


Alignment Details
Target: chr7 (Bit Score: 453; Significance: 0; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 18 - 538
Target Start/End: Original strand, 33738025 - 33738545
Alignment:
Q  18 tctacttatgcggaagtcatgcgcttctaaggcatgttttcaacttccatttaattccttcatcaactgtccaaacatgattatatcatttccaaaatgt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  33738025 tctacttatgcggaagtcatgcgcttctaaggcatgttttcaacttccatttaattccttcatcgactgtccaaacatgactatatcatttccaaaatgt 33738124  T
Q  118 atacaacttggctataactcttgggtgnnnnnnnnctcaagtacatccaaaacgaaagtaaaaaagtaagggtttaggattgaccgatggtgcaatcttt 217  Q
    |||||||||||||||||||||||||||        |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||     
T  33738125 atacaacttggctataactcttgggtgttttttttctcaagtacatccaaaactaaagtaaaaaagtaagggtttaggattgaccgatggtgcaatctta 33738224  T
Q  218 tagttacgagaaaattgttagtttccccaccatacatccttgcactctagtcgtagccccccatacatagcattgatacctgagatataagcaattctaa 317  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33738225 cagttacgagaaaattgttagtttccccaccatacatccttgcactctagtcgtagccccccatacatatcattgatacctgagatataagcaattctaa 33738324  T
Q  318 cccattttatttattgagctttccacaaaatctttctagccactttatcgtatgcattttccaaatcaatgaaaattaagtgcaagtcttttttatccat 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33738325 cccattttatttattgagctttccacaaaatctttctagccactttatcgtatgcattttccaaatcaatgaaaattaagtgcaagtcttttttatccat 33738424  T
Q  418 ctggtatcactccatcacacgtcctagtaagttcatttgctttcatggtcaacctatcaggcatacaactgaattggttgtgaataactcgagtcatttt 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  33738425 ctggtatcactccatcacacgtcctagtaagttcatttgctttcatggtcaacctaccagacatacaactgaattggttgtgaataactcgagtcatttt 33738524  T
Q  518 ttgtagtttcatctcactcga 538  Q
    ||||||| |||| ||| ||||    
T  33738525 ttgtagtctcatttcaatcga 33738545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 335 - 414
Target Start/End: Original strand, 36870340 - 36870419
Alignment:
Q  335 gctttccacaaaatctttctagccactttatcgtatgcattttccaaatcaatgaaaattaagtgcaagtcttttttatc 414  Q
    |||||||||||||||| ||||| |||| |||| || || || |||||||||||||||||||||||||||| |||||||||    
T  36870340 gctttccacaaaatctctctaggcactctatcatacgccttctccaaatcaatgaaaattaagtgcaagtattttttatc 36870419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 335 - 449
Target Start/End: Complemental strand, 36651260 - 36651146
Alignment:
Q  335 gctttccacaaaatctttctagccactttatcgtatgcattttccaaatcaatgaaaattaagtgcaagtcttttttatccatctggtatcactccatca 434  Q
    ||||||||| |||||| ||| |  ||| |||| || || ||||||||||||||||||| |||||||||||||||||||||| || | |||| ||||||||    
T  36651260 gctttccacgaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatca 36651161  T
Q  435 cacgtcctagtaagt 449  Q
    | ||||  |||||||    
T  36651160 cgcgtcgaagtaagt 36651146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 335 - 449
Target Start/End: Original strand, 39907395 - 39907509
Alignment:
Q  335 gctttccacaaaatctttctagccactttatcgtatgcattttccaaatcaatgaaaattaagtgcaagtcttttttatccatctggtatcactccatca 434  Q
    |||||||||||||||| ||| |  ||| |||| || || ||||||||||||||||||| |||||||||||||||||||||  || | |||| ||||||||    
T  39907395 gctttccacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatctgtccgatatcgctccatca 39907494  T
Q  435 cacgtcctagtaagt 449  Q
    | ||||  |||||||    
T  39907495 cgcgtcgaagtaagt 39907509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 335 - 449
Target Start/End: Original strand, 46356867 - 46356981
Alignment:
Q  335 gctttccacaaaatctttctagccactttatcgtatgcattttccaaatcaatgaaaattaagtgcaagtcttttttatccatctggtatcactccatca 434  Q
    |||||||||||||||| ||| |  ||| |||| || || ||||||||||||||||||| |||||||||||||||||||| | || | |||| ||||||||    
T  46356867 gctttccacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttattcgtccgatatcgctccatca 46356966  T
Q  435 cacgtcctagtaagt 449  Q
    | ||||  |||||||    
T  46356967 cgcgtcgaagtaagt 46356981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 334 - 415
Target Start/End: Complemental strand, 22346779 - 22346698
Alignment:
Q  334 agctttccacaaaatctttctagccactttatcgtatgcattttccaaatcaatgaaaattaagtgcaagtcttttttatcc 415  Q
    ||||||||||||||||| ||| |  ||| |||| || || ||||||||||||||||||| ||||||||||||||||||||||    
T  22346779 agctttccacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatcc 22346698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 335 - 440
Target Start/End: Complemental strand, 32629874 - 32629769
Alignment:
Q  335 gctttccacaaaatctttctagccactttatcgtatgcattttccaaatcaatgaaaattaagtgcaagtcttttttatccatctggtatcactccatca 434  Q
    |||||||||||||||| |||||  ||| |||| || || || |||||||||||||||| |||||| ||||||||||||||| || | |||| ||||||||    
T  32629874 gctttccacaaaatctctctaggtactctatcatacgccttctccaaatcaatgaaaactaagtgtaagtcttttttatccgtccgatatctctccatca 32629775  T
Q  435 cacgtc 440  Q
    | ||||    
T  32629774 cgcgtc 32629769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 361 - 419
Target Start/End: Complemental strand, 32483713 - 32483655
Alignment:
Q  361 tttatcgtatgcattttccaaatcaatgaaaattaagtgcaagtcttttttatccatct 419  Q
    |||||||||||  || | |||||||||||||||||||||||||||||||||||||||||    
T  32483713 tttatcgtatgtcttctacaaatcaatgaaaattaagtgcaagtcttttttatccatct 32483655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 335 - 435
Target Start/End: Original strand, 33350822 - 33350922
Alignment:
Q  335 gctttccacaaaatctttctagccactttatcgtatgcattttccaaatcaatgaaaattaagtgcaagtcttttttatccatctggtatcactccatca 434  Q
    |||||||||||||||| ||| |  ||| |||| ||  | ||||||||||||| ||||| |||||||||||||||||||||| || | |||| ||||||||    
T  33350822 gctttccacaaaatctctctcggtactctatcataccccttttccaaatcaaagaaaactaagtgcaagtcttttttatccgtccgatatcgctccatca 33350921  T
Q  435 c 435  Q
    |    
T  33350922 c 33350922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 335 - 432
Target Start/End: Complemental strand, 38896883 - 38896786
Alignment:
Q  335 gctttccacaaaatctttctagccactttatcgtatgcattttccaaatcaatgaaaattaagtgcaagtcttttttatccatctggtatcactccat 432  Q
    |||||||||||||||| ||| |  ||| |||| ||  | |||||||||| |||||||| |||||||||||||||||||||| || | |||| ||||||    
T  38896883 gctttccacaaaatctctctcggtactctatcatacaccttttccaaattaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccat 38896786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 380 - 449
Target Start/End: Complemental strand, 38606260 - 38606191
Alignment:
Q  380 aaatcaatgaaaattaagtgcaagtcttttttatccatctggtatcactccatcacacgtcctagtaagt 449  Q
    ||||||||||||| |||||| ||||||||||||||| || | |||| ||||||||| ||||  |||||||    
T  38606260 aaatcaatgaaaactaagtgtaagtcttttttatccgtccgatatcgctccatcacgcgtcgaagtaagt 38606191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 418
Target Start/End: Original strand, 17101541 - 17101582
Alignment:
Q  377 tccaaatcaatgaaaattaagtgcaagtcttttttatccatc 418  Q
    |||||||| ||||||| ||||| |||||||||||||||||||    
T  17101541 tccaaatcgatgaaaactaagtacaagtcttttttatccatc 17101582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 335 - 449
Target Start/End: Original strand, 452632 - 452746
Alignment:
Q  335 gctttccacaaaatctttctagccactttatcgtatgcattttccaaatcaatgaaaattaagtgcaagtcttttttatccatctggtatcactccatca 434  Q
    |||||||||||||||| ||| |  ||| ||||||| || ||||||||||||||||||| |||||||||||||||||||||| || | |||| ||||||||    
T  452632 gctttccacaaaatctctctcggtactctatcgtacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatca 452731  T
Q  435 cacgtcctagtaagt 449  Q
    | ||||  |||||||    
T  452732 cgcgtcgaagtaagt 452746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 335 - 418
Target Start/End: Complemental strand, 14769566 - 14769483
Alignment:
Q  335 gctttccacaaaatctttctagccactttatcgtatgcattttccaaatcaatgaaaattaagtgcaagtcttttttatccatc 418  Q
    |||||||||||||||| |||||| |||||||| || |  || ||||||||||||||||  ||||||||||||||||||||||||    
T  14769566 gctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatc 14769483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 335 - 415
Target Start/End: Complemental strand, 2609794 - 2609714
Alignment:
Q  335 gctttccacaaaatctttctagccactttatcgtatgcattttccaaatcaatgaaaattaagtgcaagtcttttttatcc 415  Q
    |||||||||||||||| |||   |||| |||| || || ||||||||||||||||||| ||||||||||||||||||||||    
T  2609794 gctttccacaaaatctctctcagcactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatcc 2609714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 374 - 496
Target Start/End: Complemental strand, 8180020 - 8179899
Alignment:
Q  374 ttttccaaatcaatgaaaattaagtgcaagtcttttttatccatctggtatcactccatcacacgtcctagtaagttcatttgctttcatggtcaaccta 473  Q
    |||||||||||||||||||  ||||||||||||||||||||| || | |||| ||||||||| ||||  |||||||  | |||||||||| ||| ||||     
T  8180020 ttttccaaatcaatgaaaaccaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtcaaagtaagtaga-ttgctttcatagtcgacctc 8179922  T
Q  474 tcaggcatacaactgaattggtt 496  Q
     |||||||| |||  ||||||||    
T  8179921 ccaggcataaaaccaaattggtt 8179899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 427
Target Start/End: Complemental strand, 6465024 - 6464935
Alignment:
Q  338 ttccacaaaatctttctagccactttatcgtatgcattttccaaatcaatgaaaattaagtgcaagtcttttttatccatctggtatcac 427  Q
    ||||||||||||| ||||   |||||||| ||||  || |||||||||||||||||||||||||| | ||||||||| ||||| ||||||    
T  6465024 ttccacaaaatctatctatgtactttatcatatgtcttatccaaatcaatgaaaattaagtgcaatttttttttatcaatctgatatcac 6464935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 337 - 449
Target Start/End: Original strand, 24584624 - 24584736
Alignment:
Q  337 tttccacaaaatctttctagccactttatcgtatgcattttccaaatcaatgaaaattaagtgcaagtcttttttatccatctggtatcactccatcaca 436  Q
    |||||||||||||| ||| |  ||| |||| || || || ||||||||||||||||||| ||| ||||||||||||||| || | |||| |||||||||     
T  24584624 tttccacaaaatctctctggaaactctatcatacgccttctccaaatcaatgaaaattaggtgtaagtcttttttatccgtccgatatcgctccatcacg 24584723  T
Q  437 cgtcctagtaagt 449  Q
    ||||  |||||||    
T  24584724 cgtcgaagtaagt 24584736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 156 - 193
Target Start/End: Complemental strand, 13148766 - 13148729
Alignment:
Q  156 aagtacatccaaaacgaaagtaaaaaagtaagggttta 193  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  13148766 aagtacatccaaaactaaagtaaaaaagtaagggttta 13148729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 337 - 411
Target Start/End: Original strand, 39287849 - 39287923
Alignment:
Q  337 tttccacaaaatctttctagccactttatcgtatgcattttccaaatcaatgaaaattaagtgcaagtctttttt 411  Q
    ||||||| |||||| |||||||||||||||  |||  || |||||||||||||||| | ||||||| || |||||    
T  39287849 tttccactaaatctctctagccactttatcacatgtcttctccaaatcaatgaaaactgagtgcaaatccttttt 39287923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 302 - 440
Target Start/End: Original strand, 51441747 - 51441885
Alignment:
Q  302 atataagcaattctaacccattttatttattgagctttccacaaaatctttctagccactttatcgtatgcattttccaaatcaatgaaaattaagtgca 401  Q
    ||||| |||||||||||||||||  | |   | |||||||||||||||| ||  |  ||| |||| || || ||||||||||||||||||| ||||||||    
T  51441747 atataggcaattctaacccatttcttctccagggctttccacaaaatctctcacgatactctatcatacgctttttccaaatcaatgaaaactaagtgca 51441846  T
Q  402 agtcttttttatccatctggtatcactccatcacacgtc 440  Q
    |||||||||||||| |||| |||||||||||||| ||||    
T  51441847 agtcttttttatccgtctgatatcactccatcacgcgtc 51441885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 335 - 449
Target Start/End: Complemental strand, 8671184 - 8671070
Alignment:
Q  335 gctttccacaaaatctttctagccactttatcgtatgcattttccaaatcaatgaaaattaagtgcaagtcttttttatccatctggtatcactccatca 434  Q
    |||||||||||||||| ||| |  ||| |||| || || ||||||||||||||||||| |||||||||||||||||||||| || | |||| ||||||||    
T  8671184 gctttccacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatca 8671085  T
Q  435 cacgtcctagtaagt 449  Q
    | ||||  |||||||    
T  8671084 cgcgtcgaagtaagt 8671070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 336 - 449
Target Start/End: Original strand, 29173546 - 29173659
Alignment:
Q  336 ctttccacaaaatctttctagccactttatcgtatgcattttccaaatcaatgaaaattaagtgcaagtcttttttatccatctggtatcactccatcac 435  Q
    |||||||||||| || ||| | |||| |||| || || || ||||||||||| |||| |||||||||||||||||||||| |||| |||| |||||||||    
T  29173546 ctttccacaaaacctctctcggcactctatcatacgccttctccaaatcaataaaaactaagtgcaagtcttttttatccgtctgatatcgctccatcac 29173645  T
Q  436 acgtcctagtaagt 449  Q
    |||||  |||||||    
T  29173646 acgtcgaagtaagt 29173659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 333 - 449
Target Start/End: Original strand, 43241395 - 43241511
Alignment:
Q  333 gagctttccacaaaatctttctagccactttatcgtatgcattttccaaatcaatgaaaattaagtgcaagtcttttttatccatctggtatcactccat 432  Q
    |||||||||||||||||| ||| |  ||| |||| || |  ||||||||||||||||||| |||||||||||||||||||||| || | |||| ||||||    
T  43241395 gagctttccacaaaatctctctcggtactctatcatacgtcttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccat 43241494  T
Q  433 cacacgtcctagtaagt 449  Q
    ||| ||||  |||||||    
T  43241495 cacgcgtcgaagtaagt 43241511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 374 - 512
Target Start/End: Original strand, 49348457 - 49348594
Alignment:
Q  374 ttttccaaatcaatgaaaattaagtgcaagtcttttttatccatctggtatcactccatcacacgtcctagtaagttcatttgctttcatggtcaaccta 473  Q
    ||||||||||||||||||| |||||||||||||||||||||| || | |||| ||||||||| ||||  |||||||  | |||||| ||| ||| ||||     
T  49348457 ttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtcgaagtaagtaga-ttgcttccatagtcgacctc 49348555  T
Q  474 tcaggcatacaactgaattggttgtgaataactcgagtc 512  Q
     |||||||| |||  |||||||| |  ||||||||||||    
T  49348556 ccaggcataaaaccaaattggttatccataactcgagtc 49348594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 302 - 414
Target Start/End: Original strand, 32405447 - 32405558
Alignment:
Q  302 atataagcaattctaacccattttatttattgagctttccacaaaatctttctagccactttatcgtatgcattttccaaatcaatgaaaattaagtgca 401  Q
    ||||||||||||||||||| |||  | | |   |||||||||||||||| ||||| |||| |||| || || ||||||||||||||||||| ||||||||    
T  32405447 atataagcaattctaacccctttcttctctatggctttccacaaaatctctctagacactctatcatacgc-ttttccaaatcaatgaaaactaagtgca 32405545  T
Q  402 agtcttttttatc 414  Q
      |||||||||||    
T  32405546 catcttttttatc 32405558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 160 - 214
Target Start/End: Original strand, 37463704 - 37463758
Alignment:
Q  160 acatccaaaacgaaagtaaaaaagtaagggtttaggattgaccgatggtgcaatc 214  Q
    ||||||||||| |||||||||| ||||||| ||||| ||||||  ||||||||||    
T  37463704 acatccaaaactaaagtaaaaaggtaagggcttagggttgacccttggtgcaatc 37463758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 413
Target Start/End: Original strand, 34828102 - 34828179
Alignment:
Q  336 ctttccacaaaatctttctagccactttatcgtatgcattttccaaatcaatgaaaattaagtgcaagtcttttttat 413  Q
    ||||||||||||||| | ||| |||| |||| ||  |||| | |||||||||||||| ||||||| |||| |||||||    
T  34828102 ctttccacaaaatctctttagacactatatcatacacattcttcaaatcaatgaaaactaagtgcgagtcatttttat 34828179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 46227142 - 46227186
Alignment:
Q  156 aagtacatccaaaacgaaagtaaaaaagtaagggtttaggattga 200  Q
    ||||||||||||||| |||||||||| ||||||| ||||| ||||    
T  46227142 aagtacatccaaaactaaagtaaaaaggtaagggcttagggttga 46227186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 335 - 440
Target Start/End: Original strand, 36566257 - 36566362
Alignment:
Q  335 gctttccacaaaatctttctagccactttatcgtatgcattttccaaatcaatgaaaattaagtgcaagtcttttttatccatctggtatcactccatca 434  Q
    |||||||||||||||| ||| |  ||| |||| || || ||||||||||||||||||| |||||||||||||||||||||| || | |||| ||||||||    
T  36566257 gctttccacaaaatctctctcgatactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatca 36566356  T
Q  435 cacgtc 440  Q
    | ||||    
T  36566357 cgcgtc 36566362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 335 - 411
Target Start/End: Original strand, 42855029 - 42855105
Alignment:
Q  335 gctttccacaaaatctttctagccactttatcgtatgcattttccaaatcaatgaaaattaagtgcaagtctttttt 411  Q
    |||||||||||||| | ||||| |||| |||| ||||| || |||||||||||||||| |||||| |||||||||||    
T  42855029 gctttccacaaaatatctctaggcactctatcatatgccttctccaaatcaatgaaaactaagtgtaagtctttttt 42855105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 377 - 440
Target Start/End: Complemental strand, 6184884 - 6184821
Alignment:
Q  377 tccaaatcaatgaaaattaagtgcaagtcttttttatccatctggtatcactccatcacacgtc 440  Q
    |||||||||||||||| |||||| ||||||||||||||  || | |||| ||||||||||||||    
T  6184884 tccaaatcaatgaaaactaagtgtaagtcttttttatctgtccgatatcgctccatcacacgtc 6184821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 449
Target Start/End: Complemental strand, 36544417 - 36544304
Alignment:
Q  335 gctttccacaaaatctttctagccactttatcgtatgcattttccaaatcaatgaaaattaagtgcaagtcttttttatccatctggtatcactccatca 434  Q
    |||||||||||||||| ||| |  ||| |||| || ||  |||||||||||||||||| ||||||||| |||||||||||| || | |||| ||| ||||    
T  36544417 gctttccacaaaatctatctcggtactctatcatacgc-ctttccaaatcaatgaaaactaagtgcaaatcttttttatccgtcagatatcgctcaatca 36544319  T
Q  435 cacgtcctagtaagt 449  Q
    | ||||  |||||||    
T  36544318 cgcgtcgaagtaagt 36544304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 337 - 417
Target Start/End: Original strand, 15216289 - 15216369
Alignment:
Q  337 tttccacaaaatctttctagccactttatcgtatgcattttccaaatcaatgaaaattaagtgcaagtcttttttatccat 417  Q
    |||||||||||||| |||||  ||| |||| || || || | |||||||||||||| ||| || |||||||||||||||||    
T  15216289 tttccacaaaatctatctaggtactctatcatacgccttattcaaatcaatgaaaactaaatgtaagtcttttttatccat 15216369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 335 - 440
Target Start/End: Original strand, 51448725 - 51448830
Alignment:
Q  335 gctttccacaaaatctttctagccactttatcgtatgcattttccaaatcaatgaaaattaagtgcaagtcttttttatccatctggtatcactccatca 434  Q
    |||||||||||||||| ||| |  ||| |||| || || ||||||||||||||||||| |||||||||||||||||||||| || | |||| ||||||||    
T  51448725 gctttccacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatca 51448824  T
Q  435 cacgtc 440  Q
    | ||||    
T  51448825 cgcgtc 51448830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 335 - 449
Target Start/End: Complemental strand, 52138094 - 52137980
Alignment:
Q  335 gctttccacaaaatctttctagccactttatcgtatgcattttccaaatcaatgaaaattaagtgcaagtcttttttatccatctggtatcactccatca 434  Q
    |||||||||||||||| ||| |  ||| |||| || || ||||||||||||||||||| |||||||||||||||||||||  || | |||| ||||||||    
T  52138094 gctttccacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatctgtccgatatcgctccatca 52137995  T
Q  435 cacgtcctagtaagt 449  Q
    | ||||  |||||||    
T  52137994 cgcgtcgaagtaagt 52137980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 368 - 419
Target Start/End: Original strand, 50630368 - 50630419
Alignment:
Q  368 tatgcattttccaaatcaatgaaaattaagtgcaagtcttttttatccatct 419  Q
    ||||| || |||||||||||||||| ||||||||||||||||||||||||||    
T  50630368 tatgccttctccaaatcaatgaaaactaagtgcaagtcttttttatccatct 50630419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 333 - 441
Target Start/End: Complemental strand, 9258155 - 9258047
Alignment:
Q  333 gagctttccacaaaatctttctagccactttatcgtatgcattttccaaatcaatgaaaattaagtgcaagtcttttttatccatctggtatcactccat 432  Q
    |||||||||| ||||||| |||||  | |||||| ||||| || |||||||||||||||| | ||||| |||  ||||||| | | || |||| ||||||    
T  9258155 gagctttccataaaatctctctaggaattttatcatatgcgttctccaaatcaatgaaaacttagtgcgagttatttttatgcgtttgatatcgctccat 9258056  T
Q  433 cacacgtcc 441  Q
    ||| |||||    
T  9258055 cactcgtcc 9258047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 377 - 411
Target Start/End: Complemental strand, 48221005 - 48220971
Alignment:
Q  377 tccaaatcaatgaaaattaagtgcaagtctttttt 411  Q
    |||||||||||||||| ||||||||||||||||||    
T  48221005 tccaaatcaatgaaaactaagtgcaagtctttttt 48220971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 9e-19; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 377 - 449
Target Start/End: Complemental strand, 39707688 - 39707616
Alignment:
Q  377 tccaaatcaatgaaaattaagtgcaagtcttttttatccatctggtatcactccatcacacgtcctagtaagt 449  Q
    |||||||||||||||| |||||||||||||||||||||| |||| |||| ||||||||||||||  |||||||    
T  39707688 tccaaatcaatgaaaactaagtgcaagtcttttttatccgtctgttatcgctccatcacacgtcgaagtaagt 39707616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 335 - 449
Target Start/End: Original strand, 23907318 - 23907432
Alignment:
Q  335 gctttccacaaaatctttctagccactttatcgtatgcattttccaaatcaatgaaaattaagtgcaagtcttttttatccatctggtatcactccatca 434  Q
    |||||||||||||||| ||| |  ||| |||| || || ||||||||||||||||||| |||||||||||||||||||||| |  | |||| ||||||||    
T  23907318 gctttccacaaaatctctcttggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgttcgatatcgctccatca 23907417  T
Q  435 cacgtcctagtaagt 449  Q
    | ||||  |||||||    
T  23907418 cgcgtcgaagtaagt 23907432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 335 - 496
Target Start/End: Complemental strand, 435498 - 435338
Alignment:
Q  335 gctttccacaaaatctttctagccactttatcgtatgcattttccaaatcaatgaaaattaagtgcaagtcttttttatccatctggtatcactccatca 434  Q
    |||||||||||||||| ||| |  ||| |||| || |  ||||||||||||||||||| |||||||||||||||||||||| || | |||| ||| ||||    
T  435498 gctttccacaaaatctctctcggtactctatcatacgtcttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctctatca 435399  T
Q  435 cacgtcctagtaagttcatttgctttcatggtcaacctatcaggcatacaactgaattggtt 496  Q
    | ||||  |||||||  | |||||| ||| ||||||||  |||||||| |||  ||||||||    
T  435398 cgcgtcgaagtaagtaga-ttgcttccatagtcaacctcccaggcataaaaccaaattggtt 435338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 374 - 482
Target Start/End: Original strand, 1778072 - 1778179
Alignment:
Q  374 ttttccaaatcaatgaaaattaagtgcaagtcttttttatccatctggtatcactccatcacacgtcctagtaagttcatttgctttcatggtcaaccta 473  Q
    ||||||||||||||||||| ||||||||||| |||||||||| || | |||| ||||||||||||||  |||||||  | |||||| ||| ||||||||     
T  1778072 ttttccaaatcaatgaaaactaagtgcaagttttttttatccgtccgatatcgctccatcacacgtcgaagtaagtaga-ttgcttccatagtcaacctc 1778170  T
Q  474 tcaggcata 482  Q
     ||||||||    
T  1778171 ccaggcata 1778179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 264 - 418
Target Start/End: Original strand, 55769327 - 55769481
Alignment:
Q  264 ctagtcgtagccccccatacatagcattgatacctgagatataagcaattctaacccattttatttattgagctttccacaaaatctttctagccacttt 363  Q
    ||||||| ||| ||| ||||||| |||||||| ||   ||||||||||| |||| || |||  | | | |||||||||||||||||| ||||| |||| |    
T  55769327 ctagtcgaagctccctatacatatcattgatagctctaatataagcaatcctaatccctttcttctctagagctttccacaaaatctgtctaggcactct 55769426  T
Q  364 atcgtatgcattttccaaatcaatgaaaattaagtgcaagtcttttttatccatc 418  Q
    | | || || || || |||||||||| ||| || |||||||||||||||||||||    
T  55769427 accatacgccttatcaaaatcaatgataatcaactgcaagtcttttttatccatc 55769481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 264 - 418
Target Start/End: Original strand, 55833583 - 55833737
Alignment:
Q  264 ctagtcgtagccccccatacatagcattgatacctgagatataagcaattctaacccattttatttattgagctttccacaaaatctttctagccacttt 363  Q
    ||||||| ||| ||| ||||||| |||||||| ||   ||||||||||| |||| || |||  | | | |||||||||||||||||| ||||| |||| |    
T  55833583 ctagtcgaagctccctatacatatcattgatagctctaatataagcaatcctaatccctttcttctctagagctttccacaaaatctgtctaggcactct 55833682  T
Q  364 atcgtatgcattttccaaatcaatgaaaattaagtgcaagtcttttttatccatc 418  Q
    | | || || || || |||||||||| ||| || |||||||||||||||||||||    
T  55833683 accatacgccttatcaaaatcaatgataatcaactgcaagtcttttttatccatc 55833737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 335 - 440
Target Start/End: Original strand, 48623543 - 48623648
Alignment:
Q  335 gctttccacaaaatctttctagccactttatcgtatgcattttccaaatcaatgaaaattaagtgcaagtcttttttatccatctggtatcactccatca 434  Q
    |||||||||||||||| ||| |  ||| |||| ||  | ||||||||||||||||||| |||||||||||||||||||||| ||   |||| ||||||||    
T  48623543 gctttccacaaaatctctctcggtactctatcatacaccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtcctatatcgctccatca 48623642  T
Q  435 cacgtc 440  Q
    | ||||    
T  48623643 cgcgtc 48623648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 374 - 416
Target Start/End: Complemental strand, 33369069 - 33369027
Alignment:
Q  374 ttttccaaatcaatgaaaattaagtgcaagtcttttttatcca 416  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  33369069 ttttccaaatcaatgaaaactaagtgcaagtcttttttatcca 33369027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 415
Target Start/End: Complemental strand, 16002273 - 16002194
Alignment:
Q  335 gctttccacaaaatctttctagccactttatcgtatgcattttccaaatcaatgaaaattaagtgcaagtcttttttatcc 415  Q
    |||||||||||||||| |||||  ||||| || ||||| ||||| ||||||||||||| |||||| || | ||||||||||    
T  16002273 gctttccacaaaatctctctaggaactttttcatatgccttttc-aaatcaatgaaaactaagtgaaatttttttttatcc 16002194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 437
Target Start/End: Complemental strand, 41598214 - 41598154
Alignment:
Q  377 tccaaatcaatgaaaattaagtgcaagtcttttttatccatctggtatcactccatcacac 437  Q
    ||||||||| |||||| ||||||||||||| |||||||||||   |||||||| |||||||    
T  41598214 tccaaatcattgaaaactaagtgcaagtctcttttatccatccaatatcactcaatcacac 41598154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 377 - 411
Target Start/End: Complemental strand, 2296398 - 2296364
Alignment:
Q  377 tccaaatcaatgaaaattaagtgcaagtctttttt 411  Q
    |||||||||||||||| ||||||||||||||||||    
T  2296398 tccaaatcaatgaaaactaagtgcaagtctttttt 2296364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 436
Target Start/End: Original strand, 29822316 - 29822370
Alignment:
Q  382 atcaatgaaaattaagtgcaagtcttttttatccatctggtatcactccatcaca 436  Q
    |||||| ||||||||||| |||||||||| |||||| || |||| ||||||||||    
T  29822316 atcaataaaaattaagtggaagtctttttaatccatttgatatcgctccatcaca 29822370  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 434
Target Start/End: Original strand, 27451191 - 27451288
Alignment:
Q  337 tttccacaaaatctttctagccactttatcgtatgcattttccaaatcaatgaaaattaagtgcaagtcttttttatccatctggtatcactccatca 434  Q
    |||||||||||||| ||||   ||| |||| || || || ||||||| | |||||| ||| |||||||||||||||||| || | |||| ||||||||    
T  27451191 tttccacaaaatctctctaagtactctatcctacgccttctccaaataagtgaaaactaattgcaagtcttttttatccgtccgatatcgctccatca 27451288  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 216
Target Start/End: Complemental strand, 44860552 - 44860493
Alignment:
Q  155 caagtacatccaaaacgaaagtaaaaaagtaagggtttaggattgaccgatggtgcaatctt 216  Q
    |||||||||||||| | ||||||||||| |||||| ||||||||||||  ||||||||||||    
T  44860552 caagtacatccaaa-ctaaagtaaaaaa-taagggcttaggattgacccttggtgcaatctt 44860493  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 377 - 449
Target Start/End: Complemental strand, 6937203 - 6937131
Alignment:
Q  377 tccaaatcaatgaaaattaagtgcaagtcttttttatccatctggtatcactccatcacacgtcctagtaagt 449  Q
    ||||||||||| |||||||||||||| || |||| || |||  | |||  |||||||||||||| ||||||||    
T  6937203 tccaaatcaataaaaattaagtgcaactccttttgatacattggatattgctccatcacacgtcgtagtaagt 6937131  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 335 - 411
Target Start/End: Complemental strand, 53703876 - 53703800
Alignment:
Q  335 gctttccacaaaatctttctagccactttatcgtatgcattttccaaatcaatgaaaattaagtgcaagtctttttt 411  Q
    |||||||||||||||| ||| |  |||  ||| || || |||||||||||| |||||| |||||||||||| |||||    
T  53703876 gctttccacaaaatctctctcggtactcaatcatacgccttttccaaatcagtgaaaactaagtgcaagtccttttt 53703800  T

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Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 335 - 434
Target Start/End: Complemental strand, 24177790 - 24177691
Alignment:
Q  335 gctttccacaaaatctttctagccactttatcgtatgcattttccaaatcaatgaaaattaagtgcaagtcttttttatccatctggtatcactccatca 434  Q
    |||||||||||||||| ||| |  ||| |||| ||||| |||| |||||||||||||| |||||||||||||||||||||| || | |||| ||||||||    
T  24177790 gctttccacaaaatctctctcggtactctatcatatgcctttttcaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatca 24177691  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 335 - 433
Target Start/End: Original strand, 2076490 - 2076588
Alignment:
Q  335 gctttccacaaaatctttctagccactttatcgtatgcattttccaaatcaatgaaaattaagtgcaagtcttttttatccatctggtatcactccatc 433  Q
    |||| ||||||||||| ||| |  ||| |||| || || |||||||||||||||||||||||||||||||||||||||||| || | |||| |||||||    
T  2076490 gcttgccacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaattaagtgcaagtcttttttatccgtccgatatcgctccatc 2076588  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 335 - 449
Target Start/End: Complemental strand, 20318257 - 20318143
Alignment:
Q  335 gctttccacaaaatctttctagccactttatcgtatgcattttccaaatcaatgaaaattaagtgcaagtcttttttatccatctggtatcactccatca 434  Q
    |||||||||||||||| ||  |  ||| |||| || || |||||||||| |||||||| |||||||||||||| ||||||| || | |||| ||||||||    
T  20318257 gctttccacaaaatctctcccggtactctatcatacgccttttccaaattaatgaaaactaagtgcaagtcttatttatccgtccgatatcgctccatca 20318158  T
Q  435 cacgtcctagtaagt 449  Q
    | ||||  |||||||    
T  20318157 cgcgtcgaagtaagt 20318143  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 415
Target Start/End: Complemental strand, 27182 - 27144
Alignment:
Q  377 tccaaatcaatgaaaattaagtgcaagtcttttttatcc 415  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  27182 tccaaatcaatgaaaactaagtgcaagtcttttttatcc 27144  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 417
Target Start/End: Complemental strand, 35685082 - 35685042
Alignment:
Q  377 tccaaatcaatgaaaattaagtgcaagtcttttttatccat 417  Q
    ||||||||||||||||||||| | |||||||||||||||||    
T  35685082 tccaaatcaatgaaaattaagcgtaagtcttttttatccat 35685042  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 377 - 417
Target Start/End: Complemental strand, 37123795 - 37123755
Alignment:
Q  377 tccaaatcaatgaaaattaagtgcaagtcttttttatccat 417  Q
    |||||||||||||||| ||||||||  ||||||||||||||    
T  37123795 tccaaatcaatgaaaactaagtgcacatcttttttatccat 37123755  T

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Target: scaffold0018 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 335 - 435
Target Start/End: Complemental strand, 30734 - 30634
Alignment:
Q  335 gctttccacaaaatctttctagccactttatcgtatgcattttccaaatcaatgaaaattaagtgcaagtcttttttatccatctggtatcactccatca 434  Q
    |||||||||||||||| ||| |  ||| |||| || || |||||||| |||||||||| |||||||||||||||||||||| |||| |||| || |||||    
T  30734 gctttccacaaaatctctctcggtactctatcatacgccttttccaattcaatgaaaactaagtgcaagtcttttttatccgtctgatatcgcttcatca 30635  T
Q  435 c 435  Q
    |    
T  30634 c 30634  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 335 - 433
Target Start/End: Complemental strand, 9706041 - 9705943
Alignment:
Q  335 gctttccacaaaatctttctagccactttatcgtatgcattttccaaatcaatgaaaattaagtgcaagtcttttttatccatctggtatcactccatc 433  Q
    |||||||||||||||| |||||  ||| |||| || || || |||||||||||||||| |||||| ||||||||||||||| || | |||| |||||||    
T  9706041 gctttccacaaaatctctctaggtactctatcatacgccttctccaaatcaatgaaaactaagtgtaagtcttttttatccgtccgatatcgctccatc 9705943  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 335 - 449
Target Start/End: Original strand, 20428653 - 20428767
Alignment:
Q  335 gctttccacaaaatctttctagccactttatcgtatgcattttccaaatcaatgaaaattaagtgcaagtcttttttatccatctggtatcactccatca 434  Q
    |||||||||||||||| |||||  ||| |||| || || || | |||||||||||||| || ||| ||||||||||||||| || | |||| ||||||||    
T  20428653 gctttccacaaaatctctctaggtactctatcatacgccttctacaaatcaatgaaaactaggtgtaagtcttttttatccgtccgatatcgctccatca 20428752  T
Q  435 cacgtcctagtaagt 449  Q
    ||||||  |||||||    
T  20428753 cacgtcaaagtaagt 20428767  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 156 - 214
Target Start/End: Original strand, 2208240 - 2208298
Alignment:
Q  156 aagtacatccaaaacgaaagtaaaaaagtaagggtttaggattgaccgatggtgcaatc 214  Q
    ||||||||||||||| |||||||||| ||||||| ||||||||||||  ||||||||||    
T  2208240 aagtacatccaaaactaaagtaaaaaggtaagggcttaggattgacccttggtgcaatc 2208298  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 335 - 449
Target Start/End: Complemental strand, 6082666 - 6082552
Alignment:
Q  335 gctttccacaaaatctttctagccactttatcgtatgcattttccaaatcaatgaaaattaagtgcaagtcttttttatccatctggtatcactccatca 434  Q
    |||||||||||||||| ||| |  ||| |||| ||  | ||||||||||||||||||| |||||||||||| ||||||||| || | |||| || |||||    
T  6082666 gctttccacaaaatctctctcggtactctatcatacaccttttccaaatcaatgaaaactaagtgcaagtcctttttatccgtccgatatcgctgcatca 6082567  T
Q  435 cacgtcctagtaagt 449  Q
    || |||  |||||||    
T  6082566 catgtcgaagtaagt 6082552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 335 - 434
Target Start/End: Original strand, 5260264 - 5260363
Alignment:
Q  335 gctttccacaaaatctttctagccactttatcgtatgcattttccaaatcaatgaaaattaagtgcaagtcttttttatccatctggtatcactccatca 434  Q
    ||||||||| |||||| |||||  ||| |||| || || || |||||||| ||||||| |||||| ||||||||||||||| || | |||| ||||||||    
T  5260264 gctttccactaaatctctctaggtactctatcatacgccttctccaaatcgatgaaaactaagtgtaagtcttttttatccgtccgatatcgctccatca 5260363  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 449
Target Start/End: Complemental strand, 30670118 - 30670046
Alignment:
Q  377 tccaaatcaatgaaaattaagtgcaagtcttttttatccatctggtatcactccatcacacgtcctagtaagt 449  Q
    |||||||||||||||| |||||| ||||||||||| ||  || | |||| ||||||||||||||  |||||||    
T  30670118 tccaaatcaatgaaaactaagtgtaagtcttttttctctgtccgatatcgctccatcacacgtcgaagtaagt 30670046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 377 - 425
Target Start/End: Original strand, 2681494 - 2681542
Alignment:
Q  377 tccaaatcaatgaaaattaagtgcaagtcttttttatccatctggtatc 425  Q
    |||||||||||||||| ||||||||||| ||||||| || |||| ||||    
T  2681494 tccaaatcaatgaaaactaagtgcaagtattttttacccgtctgatatc 2681542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 156 - 214
Target Start/End: Original strand, 339 - 397
Alignment:
Q  156 aagtacatccaaaacgaaagtaaaaaagtaagggtttaggattgaccgatggtgcaatc 214  Q
    ||||||||||||||| |||||||||| ||||||| ||||||||||||  ||||||||||    
T  339 aagtacatccaaaactaaagtaaaaaggtaagggcttaggattgacccttggtgcaatc 397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 336 - 415
Target Start/End: Original strand, 13275 - 13354
Alignment:
Q  336 ctttccacaaaatctttctagccactttatcgtatgcattttccaaatcaatgaaaattaagtgcaagtcttttttatcc 415  Q
    ||||||||||||||| |||||  ||| |||| || || || |||||||||||||||| |||||| |||||||| ||||||    
T  13275 ctttccacaaaatctctctaggaactctatcatacgccttctccaaatcaatgaaaactaagtgtaagtctttattatcc 13354  T

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Target: scaffold0045 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 377 - 415
Target Start/End: Original strand, 90148 - 90186
Alignment:
Q  377 tccaaatcaatgaaaattaagtgcaagtcttttttatcc 415  Q
    |||||||||||||||| |||||| |||||||||||||||    
T  90148 tccaaatcaatgaaaactaagtgtaagtcttttttatcc 90186  T

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Target: scaffold0220 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 381 - 449
Target Start/End: Original strand, 25271 - 25339
Alignment:
Q  381 aatcaatgaaaattaagtgcaagtcttttttatccatctggtatcactccatcacacgtcctagtaagt 449  Q
    |||||||||||| || ||||||||||||||||||  | || |||||||| |||| |||||  |||||||    
T  25271 aatcaatgaaaactaggtgcaagtcttttttatctgtttgatatcactctatcaaacgtcgaagtaagt 25339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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