View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16567_high_1 (Length: 486)
Name: NF16567_high_1
Description: NF16567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16567_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 12 - 468
Target Start/End: Original strand, 35693769 - 35694234
Alignment:
| Q |
12 |
gaagaaaataagcttatagatcctgaagnnnnnnnttgatgaaaagtggctgatgctgttgagaaaaccatgagcattttccagagagctt----gagtt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
35693769 |
gaagaaaataagcttatagatcctgaagaaaaaaattgatgaaaagtggctgatgctgttgagaaaaccaagagcattttccagagagcttgcttgagtt |
35693868 |
T |
|
| Q |
108 |
agcgaaagaaaattttgtgatgcaaaagagggagggaatttggttcataataggggagaggattggaaatttccttataactttctcttagt----tgca |
203 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35693869 |
agtgaaagaaaattttgtgatgcaaaagagggagggagtttggttcataataggggagaggattggaaatttccttataactttctcttagttgcatgca |
35693968 |
T |
|
| Q |
204 |
ttattgttagcttattacattagaaactaactaaagcctatccaaactaatcatctgctatactattcacaatctctcatctaataacaatttcagcaaa |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
35693969 |
ttattgttagcttattacattagaaactaactaaagcctatccaaactaatcatctgctatactattcacaatctctcatc---taacaatttcagcaaa |
35694065 |
T |
|
| Q |
304 |
tgtgcaaacttgcgccccaagctacaatacaagttcctgcataattcgcttagctcgattgtgtggcc----atagaatagctttctaaaattgaatcaa |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
35694066 |
tgtgcaaacttgcgccccaagctacaatacaagttcctgcataattcgcttagctcgattgtgtggccatatatagaatagctttctaaaattgaatcaa |
35694165 |
T |
|
| Q |
400 |
gacaaatttatgtgactgtaatagatcagatgaatcaatatacaagtctttttcaatcgatgaatcatt |
468 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35694166 |
gacaaatttatgtgactgtaatagatcagatgaatcaatatacaagtctttttcaatcgatgaatcatt |
35694234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University